STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI21565.1Rubredoxin-oxygen oxidoreductase; Identified by match to protein family HMM PF00258; match to protein family HMM PF00753. (404 aa)    
Predicted Functional Partners:
ACI20664.1
Rubrerythrin; Identified by match to protein family HMM PF00301; match to protein family HMM PF02915.
 
  
 0.869
ACI20332.1
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
  
    0.777
ACI21753.1
NADPH-dependent fmn reductase; Identified by match to protein family HMM PF02525; match to protein family HMM PF03358.
 
    0.708
ACI21312.1
Fe2+/Zn2+ uptake regulation protein; Identified by match to protein family HMM PF01475; Belongs to the Fur family.
       0.644
ACI21564.1
Coenzyme PQQ synthesis protein, putative; Identified by match to protein family HMM PF04055.
  
  
 0.614
ACI22001.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.602
ACI21101.1
SufB/sufD domain protein; Identified by match to protein family HMM PF01458.
       0.602
ACI22037.1
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
  
    0.583
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.577
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
       0.577
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.