STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI22049.1Conserved hypothetical protein; Identified by match to protein family HMM PF03692. (265 aa)    
Predicted Functional Partners:
tal
Transaldolase, putative; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
       0.773
ACI21807.1
Anaerobic glycerol-3-phosphate dehydrogenase, subunit C, putative; Identified by match to protein family HMM PF02754.
       0.773
ACI21643.1
Ribonuclease G; Identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757.
       0.773
ACI20878.1
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
       0.773
ACI20455.1
Conserved hypothetical protein.
  
     0.754
ACI21423.1
Membrane protein, putative; Identified by match to protein family HMM PF01925.
  
     0.733
ACI20524.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.707
ACI20957.1
MucD; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037.
       0.678
ACI22070.1
LssE protein; Identified by match to protein family HMM PF00563.
       0.658
ACI21276.1
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
  
     0.613
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.