STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrfANitrite reductase (cytochrome; Identified by match to protein family HMM PF02335; Belongs to the cytochrome c-552 family. (488 aa)    
Predicted Functional Partners:
ACI21586.1
Quinol oxidase; Identified by match to protein family HMM TIGR03153.
 
 0.999
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
    
 0.958
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
     
 0.945
glnA
Glutamine synthetase, type I; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; Belongs to the glutamine synthetase family.
     
 0.911
ACI20254.1
DsrM protein; Identified by match to protein family HMM PF02665.
     
 0.901
nifK
Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
     
  0.900
nifD
Nitrogenase molybdenum-iron protein alpha chain; Identified by match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862; Belongs to the NifD/NifK/NifE/NifN family.
     
  0.900
ACI21272.1
Cytochrome c family protein, putative.
  
 
 0.690
ACI20400.1
Transcriptional regulator, putative; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325.
     
 0.594
ACI20198.1
Cytochrome c biogenesis protein, CcmF/CcyK/CcsA family; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR03144.
  
 0.585
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.