flgC protein (Thermodesulfovibrio yellowstonii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

flgC

Flagellar basal-body rod protein FlgC; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family. (135 aa)

Predicted Functional Partners:

flgB

0.999

fliF

0.999

fliP

0.999

fliE

0.998

flgD

0.997

ACI20884.1

0.996

flgG

0.995

ACI21137.1

0.995

fliG

0.994

fliQ

0.994

Your Current Organism:

Thermodesulfovibrio yellowstonii

NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACI20884.1	ACI21137.1	THEYE_A0275	THEYE_A2062	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559.	Flagellar hook basal-body protein FlgG; Identified by match to protein family HMM PF00460.	0.920
ACI20884.1	flgB	THEYE_A0275	THEYE_A0264	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559.	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.995
ACI20884.1	flgC	THEYE_A0275	THEYE_A0265	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559.	Flagellar basal-body rod protein FlgC; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.	0.996
ACI20884.1	flgD	THEYE_A0275	THEYE_A0274	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559.	Flagellar hook capping protein; Identified by match to protein family HMM PF03963.	0.997
ACI20884.1	flgG	THEYE_A0275	THEYE_A2061	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559.	Flagellar basal-body rod protein FlgG; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02488.	0.913
ACI20884.1	fliE	THEYE_A0275	THEYE_A0266	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559.	Flagellar hook-basal body complex protein (FliE); Identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205.	0.982
ACI20884.1	fliF	THEYE_A0275	THEYE_A0267	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.996
ACI20884.1	fliG	THEYE_A0275	THEYE_A0268	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559.	Flagellar motor switch protein FliG; Identified by match to protein family HMM PF01706; match to protein family HMM TIGR00207.	0.990
ACI20884.1	fliP	THEYE_A0275	THEYE_A2079	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559.	Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.	0.997
ACI20884.1	fliQ	THEYE_A0275	THEYE_A2078	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559.	Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.	0.993
ACI21137.1	ACI20884.1	THEYE_A2062	THEYE_A0275	Flagellar hook basal-body protein FlgG; Identified by match to protein family HMM PF00460.	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559.	0.920
ACI21137.1	flgB	THEYE_A2062	THEYE_A0264	Flagellar hook basal-body protein FlgG; Identified by match to protein family HMM PF00460.	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.947
ACI21137.1	flgC	THEYE_A2062	THEYE_A0265	Flagellar hook basal-body protein FlgG; Identified by match to protein family HMM PF00460.	Flagellar basal-body rod protein FlgC; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.	0.995
ACI21137.1	flgD	THEYE_A2062	THEYE_A0274	Flagellar hook basal-body protein FlgG; Identified by match to protein family HMM PF00460.	Flagellar hook capping protein; Identified by match to protein family HMM PF03963.	0.983
ACI21137.1	flgG	THEYE_A2062	THEYE_A2061	Flagellar hook basal-body protein FlgG; Identified by match to protein family HMM PF00460.	Flagellar basal-body rod protein FlgG; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02488.	0.983
ACI21137.1	fliE	THEYE_A2062	THEYE_A0266	Flagellar hook basal-body protein FlgG; Identified by match to protein family HMM PF00460.	Flagellar hook-basal body complex protein (FliE); Identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205.	0.950
ACI21137.1	fliF	THEYE_A2062	THEYE_A0267	Flagellar hook basal-body protein FlgG; Identified by match to protein family HMM PF00460.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.972
ACI21137.1	fliG	THEYE_A2062	THEYE_A0268	Flagellar hook basal-body protein FlgG; Identified by match to protein family HMM PF00460.	Flagellar motor switch protein FliG; Identified by match to protein family HMM PF01706; match to protein family HMM TIGR00207.	0.961
ACI21137.1	fliP	THEYE_A2062	THEYE_A2079	Flagellar hook basal-body protein FlgG; Identified by match to protein family HMM PF00460.	Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.	0.997
ACI21137.1	fliQ	THEYE_A2062	THEYE_A2078	Flagellar hook basal-body protein FlgG; Identified by match to protein family HMM PF00460.	Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.	0.977

page 1 of 6

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About