STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI20919.1Hypothetical protein; Identified by glimmer; putative. (160 aa)    
Predicted Functional Partners:
ACI21198.1
Probable fimbrial type-4 assembly membrane transmembrane protein, putative; Identified by match to protein family HMM PF05137.
 
 
 0.994
ACI22195.1
PilQ; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.
 
 
 0.993
ACI21339.1
Putative fimbrial assembly protein PilO-like protein.
 
 
 0.991
ACI21582.1
Hypothetical protein; Identified by glimmer; putative.
 
 
 0.976
ACI21247.1
Hypothetical protein; Identified by glimmer; putative.
       0.773
ACI20384.1
Cell cycle transcriptional regulator CtrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
       0.773
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.714
ACI21244.1
Pilin secretion/fimbrial assembly system protein, PilC, putative; Identified by match to protein family HMM PF00482.
    
 
 0.498
ACI22092.1
Type IV pilin; Identified by match to protein family HMM PF00482.
    
 
 0.498
ACI21464.1
Outer membrane lipoprotein carrier protein LolA; Identified by match to protein family HMM PF03548.
  
     0.435
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.