STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI21197.1Conserved hypothetical protein. (186 aa)    
Predicted Functional Partners:
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
       0.773
ACI20487.1
Modification methylase MjaII.
       0.773
ACI21711.1
Type II restriction endonuclease TdeIII.
       0.773
ACI20822.1
DNA methylase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family.
       0.762
ACI21966.1
Conserved hypothetical protein.
       0.762
ACI21090.1
Hypothetical protein; Identified by glimmer; putative.
       0.751
rsmI
Conserved hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.751
ACI20834.1
Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.
       0.751
ACI21373.1
Fumarate hydratase, subunit alpha; Identified by match to protein family HMM PF05681; match to protein family HMM TIGR00722.
       0.751
ACI20479.1
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily; Identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723.
       0.751
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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