STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI20227.1Tetratricopeptide repeat domain protein. (200 aa)    
Predicted Functional Partners:
hisS
histidyl-tRNA synthetase; Identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442.
  
    0.797
ACI20848.1
PHP domain protein; Identified by match to protein family HMM PF02811.
  
    0.782
ACI21924.1
Two-component response regulator; Identified by match to protein family HMM PF00072.
  
    0.775
ACI20743.1
Identified by match to protein family HMM PF00857.
       0.773
ACI20307.1
Two-component hybrid sensor and regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229.
       0.773
ACI21984.1
Conserved hypothetical protein.
       0.773
ACI21259.1
Identified by match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family.
       0.651
ACI20309.1
CoB--CoM heterodisulfide reductase iron-sulfur subunit A 2, putative; Identified by match to protein family HMM PF00037.
       0.651
ACI20872.1
Conserved domain protein; Identified by match to protein family HMM PF00037.
  
    0.531
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
  
   0.433
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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