STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI21298.1Tetratricopeptide repeat domain protein; Identified by match to protein family HMM TIGR03302. (248 aa)    
Predicted Functional Partners:
ACI22168.1
Outer membrane protein, putative; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.
 
 
 0.951
ACI21978.1
Outer membrane protein, OMP85 family, putative; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.
 
 
 0.925
ACI20693.1
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
  
    0.796
lpxB
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
       0.786
ACI22057.1
Siroheme synthase; Identified by match to protein family HMM TIGR01470.
       0.779
ACI21770.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.777
ACI21184.1
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408.
       0.773
ACI21072.1
Organic solvent tolerance protein; Identified by match to protein family HMM PF03968; match to protein family HMM PF04453.
 
  
 0.726
ACI20244.1
Protein TolB, putative; Identified by match to protein family HMM PF07676.
  
   
 0.697
ACI20289.1
ABC transporter, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212.
 
   
 0.696
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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