STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI20375.1Conserved hypothetical protein. (144 aa)    
Predicted Functional Partners:
ACI22186.1
Conserved protein.
 
     0.815
trpF
N-(5'phosphoribosyl)anthranilate isomerase; Identified by match to protein family HMM PF00697; Belongs to the TrpF family.
       0.773
rfaF
Lipopolysaccharide heptosyltransferase II; Identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195.
       0.757
ACI20222.1
ADP-heptose--LPS heptosyltransferase II; Identified by match to protein family HMM PF01075; match to protein family HMM PF08645; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; match to protein family HMM TIGR02195.
       0.757
ACI20800.1
Identified by match to protein family HMM TIGR00412.
       0.661
ACI21695.1
Hypothetical protein; Identified by glimmer; putative.
       0.549
ACI20182.1
DppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
       0.549
ACI21319.1
Membrane protein, putative; Identified by match to protein family HMM PF01925.
       0.510
ACI21201.1
Sensory box histidine kinase; Identified by match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.
  
     0.487
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.416
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
Server load: low (26%) [HD]