STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaFLipopolysaccharide heptosyltransferase II; Identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195. (332 aa)    
Predicted Functional Partners:
ACI20693.1
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
  
 0.981
ACI22039.1
Glycosyl transferase, family 9; Identified by match to protein family HMM PF01075.
  
  
 
0.928
ACI20826.1
WabG; Identified by match to protein family HMM PF00534.
  
 
  0.927
ACI20671.1
Lipopolysaccharide heptosyltransferase III, putative; Identified by match to protein family HMM PF01075; match to protein family HMM TIGR02201.
  
  
 
0.925
ACI20928.1
O-Antigen Polymerase family; Identified by match to protein family HMM PF04932.
  
 
 0.903
ACI20222.1
ADP-heptose--LPS heptosyltransferase II; Identified by match to protein family HMM PF01075; match to protein family HMM PF08645; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; match to protein family HMM TIGR02195.
 
   
0.852
ACI21022.1
Bifunctional protein HldE; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
 
  
 0.815
rfaE
RfaE bifunctional protein, domain I; Identified by match to protein family HMM PF00294; match to protein family HMM TIGR02198.
 
  
 0.780
ACI22186.1
Conserved protein.
       0.757
trpF
N-(5'phosphoribosyl)anthranilate isomerase; Identified by match to protein family HMM PF00697; Belongs to the TrpF family.
       0.757
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.