STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI21857.1Hydrogenase-4 component I; Identified by match to protein family HMM PF01058. (156 aa)    
Predicted Functional Partners:
ACI20361.1
Hydrogenase 4, component C or formate hydrogen lyase, subunit 4; Identified by match to protein family HMM PF00146.
 
 
 0.999
ACI21046.1
Hydrogenase-4 component G; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346.
 
 0.999
ACI21238.1
Hydrogenase 4, component B or formate hydrogen lyase, subunit 3, putative; Identified by match to protein family HMM PF00361.
 
 
 0.984
ACI22142.1
NAD(P)H-quinone oxidoreductase chain I, (NAD(P)H dehydrogenase, chain I); Identified by match to protein family HMM PF00037.
 
 
 0.984
ACI20701.1
Na+/H+ antiporter subunit, putative; Identified by match to protein family HMM PF00361.
 
 
 0.980
nuoD2
NADH dehydrogenase i, d subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
 
     0.962
nuoD1
NADH dehydrogenase i, d subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
 
     0.961
ACI22078.1
Hypothetical protein; Identified by glimmer; putative.
 
  
 0.947
nuoI
NADH-ubiquinone oxidoreductase 23 kda subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
 
 
 0.939
ACI22150.1
Hydrogenase-1; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512.
  
 
 0.925
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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