STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI20771.1AcrB protein; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1043 aa)    
Predicted Functional Partners:
ACI21949.1
Outer membrane protein OprM; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
 0.986
ACI20674.1
Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.977
ACI21556.1
Outer membrane protein OprM; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
 0.967
ACI21096.1
RND efflux system, outer membrane lipoprotein, NodT; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
 0.943
ACI21387.1
Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.
 
 0.905
ACI21733.1
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.870
ACI21074.1
Universal stress protein family.
       0.613
ACI21330.1
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
     
 0.599
ACI20209.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02596.
       0.540
yajC
Preprotein translocase, YajC subunit; Identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739.
    
 
 0.486
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.