ACI21387.1 protein (Thermodesulfovibrio yellowstonii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACI21387.1

Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730. (381 aa)

Predicted Functional Partners:

ACI20218.1

0.977

ACI21556.1

0.932

ACI20771.1

0.905

ACI21949.1

0.833

ACI20216.1

0.695

ACI20598.1

0.613

ACI21096.1

0.611

ACI20867.1

0.582

ACI21656.1

0.540

ACI20665.1

0.509

Your Current Organism:

Thermodesulfovibrio yellowstonii

NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACI20216.1	ACI21096.1	THEYE_A0923	THEYE_A1405	Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	RND efflux system, outer membrane lipoprotein, NodT; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.	0.635
ACI20216.1	ACI21387.1	THEYE_A0923	THEYE_A1618	Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	0.695
ACI20216.1	ACI21556.1	THEYE_A0923	THEYE_A1620	Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	Outer membrane protein OprM; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.	0.745
ACI20216.1	ACI21949.1	THEYE_A0923	THEYE_A1568	Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	Outer membrane protein OprM; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.	0.745
ACI20218.1	ACI20598.1	THEYE_A1619	THEYE_A1621	AcrB protein; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915.	Universal stress protein family.	0.613
ACI20218.1	ACI20867.1	THEYE_A1619	THEYE_A1617	AcrB protein; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.599
ACI20218.1	ACI21096.1	THEYE_A1619	THEYE_A1405	AcrB protein; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915.	RND efflux system, outer membrane lipoprotein, NodT; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.	0.943
ACI20218.1	ACI21387.1	THEYE_A1619	THEYE_A1618	AcrB protein; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915.	Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	0.977
ACI20218.1	ACI21556.1	THEYE_A1619	THEYE_A1620	AcrB protein; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915.	Outer membrane protein OprM; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.	0.986
ACI20218.1	ACI21656.1	THEYE_A1619	THEYE_A1616	AcrB protein; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915.	Conserved hypothetical protein; Identified by match to protein family HMM PF02596.	0.540
ACI20218.1	ACI21949.1	THEYE_A1619	THEYE_A1568	AcrB protein; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915.	Outer membrane protein OprM; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.	0.967
ACI20598.1	ACI20218.1	THEYE_A1621	THEYE_A1619	Universal stress protein family.	AcrB protein; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915.	0.613
ACI20598.1	ACI20867.1	THEYE_A1621	THEYE_A1617	Universal stress protein family.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.467
ACI20598.1	ACI21387.1	THEYE_A1621	THEYE_A1618	Universal stress protein family.	Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	0.613
ACI20598.1	ACI21556.1	THEYE_A1621	THEYE_A1620	Universal stress protein family.	Outer membrane protein OprM; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.	0.773
ACI20598.1	ACI21656.1	THEYE_A1621	THEYE_A1616	Universal stress protein family.	Conserved hypothetical protein; Identified by match to protein family HMM PF02596.	0.447
ACI20665.1	ACI21387.1	THEYE_A0122	THEYE_A1618	ABC transporter permease protein; Identified by match to protein family HMM PF02687.	Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	0.509
ACI20771.1	ACI21096.1	THEYE_A1567	THEYE_A1405	AcrB protein; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	RND efflux system, outer membrane lipoprotein, NodT; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.	0.943
ACI20771.1	ACI21387.1	THEYE_A1567	THEYE_A1618	AcrB protein; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	0.905
ACI20771.1	ACI21556.1	THEYE_A1567	THEYE_A1620	AcrB protein; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	Outer membrane protein OprM; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.	0.967