STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaERfaE bifunctional protein, domain I; Identified by match to protein family HMM PF00294; match to protein family HMM TIGR02198. (331 aa)    
Predicted Functional Partners:
ACI21022.1
Bifunctional protein HldE; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
     0.975
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate; Belongs to the SIS family. GmhA subfamily.
   
 0.895
ACI20222.1
ADP-heptose--LPS heptosyltransferase II; Identified by match to protein family HMM PF01075; match to protein family HMM PF08645; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; match to protein family HMM TIGR02195.
  
 0.884
ACI21547.1
Glycosyl transferase, family 9; Identified by match to protein family HMM PF01075.
  
 0.785
rfaF
Lipopolysaccharide heptosyltransferase II; Identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195.
 
  
 0.780
ACI21059.1
ADP-heptose:LPS heptosyltransferase II, putative; Identified by match to protein family HMM PF01075.
 
  
 0.779
ACI22039.1
Glycosyl transferase, family 9; Identified by match to protein family HMM PF01075.
 
  
 0.778
ACI21165.1
Glycosyl transferase, family 9; Identified by match to protein family HMM PF01075.
 
  
 0.778
ACI20671.1
Lipopolysaccharide heptosyltransferase III, putative; Identified by match to protein family HMM PF01075; match to protein family HMM TIGR02201.
 
  
 0.775
ACI21082.1
Conserved protein.
       0.773
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.