STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI21018.1Carbohydrate-selective porin, OprB family; Identified by match to protein family HMM PF04966; Belongs to the OprB family. (376 aa)    
Predicted Functional Partners:
ACI21557.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.767
ACI21265.1
Conserved hypothetical protein.
 
     0.756
ACI20945.1
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.736
ACI21375.1
Conserved hypothetical protein.
       0.723
ACI21594.1
CbiM; Identified by match to protein family HMM PF01891.
       0.723
cbiQ
Cobalt ABC transporter, permease protein CbiQ; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454.
       0.723
ACI21869.1
Cobalt import ATP-binding protein CbiO; Identified by match to protein family HMM PF00005; match to protein family HMM PF02463.
       0.723
ACI21962.1
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
     0.721
ACI21980.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.686
ACI22021.1
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
     0.613
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.