ACI20901.1 protein (Thermodesulfovibrio yellowstonii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACI20901.1

Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909. (113 aa)

Predicted Functional Partners:

ACI20927.1

0.948

ACI21557.1

0.773

fliW

0.727

csrA

0.727

ACI21308.1

0.714

ACI21768.1

0.549

ACI22019.1

0.419

ACI20560.1

0.414

Your Current Organism:

Thermodesulfovibrio yellowstonii

NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACI20560.1	ACI20901.1	THEYE_A1187	THEYE_A2049	Conserved hypothetical protein.	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	0.414
ACI20901.1	ACI20560.1	THEYE_A2049	THEYE_A1187	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	Conserved hypothetical protein.	0.414
ACI20901.1	ACI20927.1	THEYE_A2049	THEYE_A2048	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	Conserved hypothetical protein.	0.948
ACI20901.1	ACI21308.1	THEYE_A2049	THEYE_A2046	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	Periplasmic serine protease; Identified by match to protein family HMM PF00574; match to protein family HMM PF01972.	0.714
ACI20901.1	ACI21557.1	THEYE_A2049	THEYE_A2047	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	Hypothetical protein; Identified by glimmer; putative.	0.773
ACI20901.1	ACI21768.1	THEYE_A2049	THEYE_A1690	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	Nucleotidyltransferase; Identified by match to protein family HMM PF01909.	0.549
ACI20901.1	ACI22019.1	THEYE_A2049	THEYE_A2052	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	Hypothetical protein; Identified by glimmer; putative.	0.419
ACI20901.1	csrA	THEYE_A2049	THEYE_A2051	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.	0.727
ACI20901.1	fliW	THEYE_A2049	THEYE_A2050	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	Conserved hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.	0.727
ACI20927.1	ACI20901.1	THEYE_A2048	THEYE_A2049	Conserved hypothetical protein.	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	0.948
ACI20927.1	ACI21308.1	THEYE_A2048	THEYE_A2046	Conserved hypothetical protein.	Periplasmic serine protease; Identified by match to protein family HMM PF00574; match to protein family HMM PF01972.	0.714
ACI20927.1	ACI21557.1	THEYE_A2048	THEYE_A2047	Conserved hypothetical protein.	Hypothetical protein; Identified by glimmer; putative.	0.773
ACI20927.1	ACI22019.1	THEYE_A2048	THEYE_A2052	Conserved hypothetical protein.	Hypothetical protein; Identified by glimmer; putative.	0.419
ACI20927.1	csrA	THEYE_A2048	THEYE_A2051	Conserved hypothetical protein.	Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.	0.727
ACI20927.1	fliW	THEYE_A2048	THEYE_A2050	Conserved hypothetical protein.	Conserved hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.	0.727
ACI21308.1	ACI20901.1	THEYE_A2046	THEYE_A2049	Periplasmic serine protease; Identified by match to protein family HMM PF00574; match to protein family HMM PF01972.	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	0.714
ACI21308.1	ACI20927.1	THEYE_A2046	THEYE_A2048	Periplasmic serine protease; Identified by match to protein family HMM PF00574; match to protein family HMM PF01972.	Conserved hypothetical protein.	0.714
ACI21308.1	ACI21557.1	THEYE_A2046	THEYE_A2047	Periplasmic serine protease; Identified by match to protein family HMM PF00574; match to protein family HMM PF01972.	Hypothetical protein; Identified by glimmer; putative.	0.714
ACI21308.1	csrA	THEYE_A2046	THEYE_A2051	Periplasmic serine protease; Identified by match to protein family HMM PF00574; match to protein family HMM PF01972.	Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.	0.710
ACI21308.1	fliW	THEYE_A2046	THEYE_A2050	Periplasmic serine protease; Identified by match to protein family HMM PF00574; match to protein family HMM PF01972.	Conserved hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.	0.672