STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI21087.1HD domain protein, putative; Identified by match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277. (279 aa)    
Predicted Functional Partners:
ACI21896.1
Diguanylate cyclase; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
      0.898
cheB
Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
       0.775
ACI21145.1
Hypothetical protein; Identified by glimmer; putative.
       0.773
ACI21372.1
Chemotaxis protein CheZ; Identified by match to protein family HMM PF01584; match to protein family HMM PF04344.
       0.773
fliM
Flagellar motor switch protein FliM; Identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397.
 
    0.759
ACI21961.1
RNA polymerase sigma factor for flagellar operon; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
 
     0.757
flgI
Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.755
ACI21273.1
Flagellar biosynthesis protein FlhG; Identified by match to protein family HMM PF01656.
 
     0.746
ACI21909.1
Chemotaxis protein CheY; Identified by match to protein family HMM PF00072.
   
   0.740
ACI20735.1
CheA; Identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895.
       0.731
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.