Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KSV59699.1LytTR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)    
Predicted Functional Partners:
KSV59698.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.758
KSV59743.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.685
KSV58177.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.685
KSV60115.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.610
KSV58281.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.529
KSV58660.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.505
KSV57367.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.482
KSV59700.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.448
KSV59116.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.419
ASU35_16565
His_kinase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.414
Your Current Organism:
Acetivibrio ethanolgignens
NCBI taxonomy Id: 290052
Other names: A. ethanolgignens, ATCC 33324, Acetivibrio ethanoligignens, DSM 3005, LMG 7055, LMG:7055, strain 77-6
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