STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ34109.1Hypothetical protein. (59 aa)    
Predicted Functional Partners:
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.741
SJZ34105.1
Exonuclease SbcC.
       0.741
SJZ34112.1
Hypothetical protein.
       0.705
SJZ34125.1
Cobalt/nickel transport system permease protein.
       0.446
SJZ34156.1
Cobalt/nickel transport system permease protein.
       0.446
SJZ34168.1
Cobalt/nickel transport system ATP-binding protein.
       0.446
Your Current Organism:
Eubacterium coprostanoligenes
NCBI taxonomy Id: 290054
Other names: ATCC 51222, E. coprostanoligenes, strain HL
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.