STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ34212.1Stage IV sporulation protein B. (396 aa)    
Predicted Functional Partners:
SJZ52397.1
Two-component system, response regulator, stage 0 sporulation protein A.
   
 0.949
SJZ50286.1
RNA polymerase, sigma 27/28 subunit, RpsK/SigK; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.851
SJZ80961.1
Stage II sporulation protein P (SpoIIP).
  
   
 0.830
SJZ46433.1
Stage II sporulation protein AB (anti-sigma F factor).
  
   
 0.805
SJZ57625.1
Stage II sporulation protein R.
  
   
 0.802
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.801
SJZ54227.1
Putative DeoR family transcriptional regulator, stage III sporulation protein D.
  
   
 0.798
SJZ58319.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.798
SJZ54296.1
Stage III sporulation protein AA.
 
     0.784
SJZ40546.1
Stage V sporulation protein AD.
  
    0.781
Your Current Organism:
Eubacterium coprostanoligenes
NCBI taxonomy Id: 290054
Other names: ATCC 51222, E. coprostanoligenes, strain HL
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.