Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SJZ35114.1 | SJZ35123.1 | SAMN02745114_00169 | SAMN02745114_00170 | D-alanine transaminase. | Protein of unknown function. | 0.827 |
SJZ35114.1 | SJZ35133.1 | SAMN02745114_00169 | SAMN02745114_00171 | D-alanine transaminase. | Sensor histidine kinase inhibitor, KipI family. | 0.783 |
SJZ35114.1 | SJZ35176.1 | SAMN02745114_00169 | SAMN02745114_00175 | D-alanine transaminase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.855 |
SJZ35114.1 | SJZ36480.1 | SAMN02745114_00169 | SAMN02745114_00249 | D-alanine transaminase. | Chorismate mutase / prephenate dehydratase. | 0.894 |
SJZ35114.1 | SJZ44336.1 | SAMN02745114_00169 | SAMN02745114_00573 | D-alanine transaminase. | Malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase. | 0.793 |
SJZ35114.1 | SJZ52306.1 | SAMN02745114_00169 | SAMN02745114_00846 | D-alanine transaminase. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.856 |
SJZ35114.1 | SJZ59783.1 | SAMN02745114_00169 | SAMN02745114_01063 | D-alanine transaminase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.864 |
SJZ35114.1 | hisC | SAMN02745114_00169 | SAMN02745114_01081 | D-alanine transaminase. | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.800 |
SJZ35114.1 | ilvD | SAMN02745114_00169 | SAMN02745114_00744 | D-alanine transaminase. | Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. | 0.843 |
SJZ35114.1 | leuA | SAMN02745114_00169 | SAMN02745114_00694 | D-alanine transaminase. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.799 |
SJZ35123.1 | SJZ35114.1 | SAMN02745114_00170 | SAMN02745114_00169 | Protein of unknown function. | D-alanine transaminase. | 0.827 |
SJZ35123.1 | SJZ35133.1 | SAMN02745114_00170 | SAMN02745114_00171 | Protein of unknown function. | Sensor histidine kinase inhibitor, KipI family. | 0.800 |
SJZ35123.1 | SJZ35176.1 | SAMN02745114_00170 | SAMN02745114_00175 | Protein of unknown function. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.648 |
SJZ35133.1 | SJZ35114.1 | SAMN02745114_00171 | SAMN02745114_00169 | Sensor histidine kinase inhibitor, KipI family. | D-alanine transaminase. | 0.783 |
SJZ35133.1 | SJZ35123.1 | SAMN02745114_00171 | SAMN02745114_00170 | Sensor histidine kinase inhibitor, KipI family. | Protein of unknown function. | 0.800 |
SJZ35133.1 | SJZ35176.1 | SAMN02745114_00171 | SAMN02745114_00175 | Sensor histidine kinase inhibitor, KipI family. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.603 |
SJZ35133.1 | SJZ44336.1 | SAMN02745114_00171 | SAMN02745114_00573 | Sensor histidine kinase inhibitor, KipI family. | Malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase. | 0.462 |
SJZ35176.1 | SJZ35114.1 | SAMN02745114_00175 | SAMN02745114_00169 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | D-alanine transaminase. | 0.855 |
SJZ35176.1 | SJZ35123.1 | SAMN02745114_00175 | SAMN02745114_00170 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Protein of unknown function. | 0.648 |
SJZ35176.1 | SJZ35133.1 | SAMN02745114_00175 | SAMN02745114_00171 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Sensor histidine kinase inhibitor, KipI family. | 0.603 |
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