Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SJZ56650.1 | SJZ73572.1 | SAMN02745114_00967 | SAMN02745114_01460 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Phosphate starvation-inducible protein PhoH. | 0.594 |
SJZ56650.1 | era | SAMN02745114_00967 | SAMN02745114_01458 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.454 |
SJZ56650.1 | rsfS | SAMN02745114_00967 | SAMN02745114_00772 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.718 |
SJZ56650.1 | ybeY | SAMN02745114_00967 | SAMN02745114_01459 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.408 |
SJZ73355.1 | SJZ73448.1 | SAMN02745114_01454 | SAMN02745114_01457 | Beta-galactosidase. | Type I secretion C-terminal target domain (VC_A0849 subclass). | 0.727 |
SJZ73355.1 | SJZ73572.1 | SAMN02745114_01454 | SAMN02745114_01460 | Beta-galactosidase. | Phosphate starvation-inducible protein PhoH. | 0.569 |
SJZ73355.1 | SJZ73609.1 | SAMN02745114_01454 | SAMN02745114_01461 | Beta-galactosidase. | CBS domain-containing protein. | 0.569 |
SJZ73355.1 | SJZ73631.1 | SAMN02745114_01454 | SAMN02745114_01462 | Beta-galactosidase. | Methyltransferase, FkbM family. | 0.406 |
SJZ73355.1 | era | SAMN02745114_01454 | SAMN02745114_01458 | Beta-galactosidase. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.569 |
SJZ73355.1 | mutS2 | SAMN02745114_01454 | SAMN02745114_01455 | Beta-galactosidase. | DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.727 |
SJZ73355.1 | recO | SAMN02745114_01454 | SAMN02745114_01456 | Beta-galactosidase. | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.727 |
SJZ73355.1 | ybeY | SAMN02745114_01454 | SAMN02745114_01459 | Beta-galactosidase. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.569 |
SJZ73448.1 | SJZ73355.1 | SAMN02745114_01457 | SAMN02745114_01454 | Type I secretion C-terminal target domain (VC_A0849 subclass). | Beta-galactosidase. | 0.727 |
SJZ73448.1 | SJZ73572.1 | SAMN02745114_01457 | SAMN02745114_01460 | Type I secretion C-terminal target domain (VC_A0849 subclass). | Phosphate starvation-inducible protein PhoH. | 0.603 |
SJZ73448.1 | SJZ73609.1 | SAMN02745114_01457 | SAMN02745114_01461 | Type I secretion C-terminal target domain (VC_A0849 subclass). | CBS domain-containing protein. | 0.603 |
SJZ73448.1 | SJZ73631.1 | SAMN02745114_01457 | SAMN02745114_01462 | Type I secretion C-terminal target domain (VC_A0849 subclass). | Methyltransferase, FkbM family. | 0.428 |
SJZ73448.1 | era | SAMN02745114_01457 | SAMN02745114_01458 | Type I secretion C-terminal target domain (VC_A0849 subclass). | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.603 |
SJZ73448.1 | mutS2 | SAMN02745114_01457 | SAMN02745114_01455 | Type I secretion C-terminal target domain (VC_A0849 subclass). | DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.773 |
SJZ73448.1 | recO | SAMN02745114_01457 | SAMN02745114_01456 | Type I secretion C-terminal target domain (VC_A0849 subclass). | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.773 |
SJZ73448.1 | ybeY | SAMN02745114_01457 | SAMN02745114_01459 | Type I secretion C-terminal target domain (VC_A0849 subclass). | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.603 |
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