Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PENO1_109240Uncharacterized protein. (183 aa)    
Predicted Functional Partners:
PENO1_085990
Uncharacterized protein.
    
 0.713
PENO1_088240
DNA repair protein.
    
  0.651
PENO1_069290
Uncharacterized protein.
   
  0.643
PENO1_005750
Ribonuclease P protein subunit.
   
  0.586
PENO1_073950
POPLD.
    
  0.578
PENO1_087080
Ribonuclease P/MRP protein subunit.
    
  0.578
PENO1_078650
RNase P subunit p30.
    
  0.578
PENO1_082260
RNAse P, Rpr2/Rpp21 subunit.
    
  0.576
PENO1_106220
Uncharacterized protein.
   
    0.575
PENO1_069260
DNA repair protein rad10.
    
 0.568
Your Current Organism:
Penicillium sp. occitanis
NCBI taxonomy Id: 290292
Other names: P. sp. 'occitanis', Penicillium occitanis, Penicillium sp. 'occitanis'
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