PENO1_046400 protein (Penicillium sp. occitanis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PENO1_046400

Nucleic acid-binding, OB-fold. (376 aa)

Predicted Functional Partners:

PENO1_104570

0.999

PENO1_092750

0.999

PENO1_084540

0.999

PENO1_077850

0.999

PENO1_080800

0.999

PENO1_061910

0.999

PENO1_055940

0.999

PENO1_058990

0.999

PENO1_053960

0.999

PENO1_070930

0.999

Your Current Organism:

Penicillium sp. occitanis

NCBI taxonomy Id: 290292
Other names: P. sp. 'occitanis', Penicillium occitanis, Penicillium sp. 'occitanis'

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PENO1_046400	PENO1_053960	A0A2H3IF81	A0A2H3ID01	Nucleic acid-binding, OB-fold.	Ribosomal protein L6, conserved site-2.	0.999
PENO1_046400	PENO1_055940	A0A2H3IF81	A0A2H3IB88	Nucleic acid-binding, OB-fold.	Ribosomal protein L14.	0.999
PENO1_046400	PENO1_058990	A0A2H3IF81	A0A2H3IC99	Nucleic acid-binding, OB-fold.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
PENO1_046400	PENO1_061910	A0A2H3IF81	A0A2H3IAT2	Nucleic acid-binding, OB-fold.	Ribosomal protein L32e.	0.999
PENO1_046400	PENO1_070930	A0A2H3IF81	A0A2H3IEJ1	Nucleic acid-binding, OB-fold.	Ribosomal protein L25/L23.	0.999
PENO1_046400	PENO1_077850	A0A2H3IF81	A0A2H3I5P8	Nucleic acid-binding, OB-fold.	Ribosomal protein L5; Belongs to the universal ribosomal protein uL5 family.	0.999
PENO1_046400	PENO1_080800	A0A2H3IF81	A0A2H3I686	Nucleic acid-binding, OB-fold.	Ribosomal protein L30e.	0.999
PENO1_046400	PENO1_084540	A0A2H3IF81	A0A2H3I5B9	Nucleic acid-binding, OB-fold.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
PENO1_046400	PENO1_092750	A0A2H3IF81	A0A2H3I379	Nucleic acid-binding, OB-fold.	Ribosomal protein L26/L24P, eukaryotic/archaeal.	0.999
PENO1_046400	PENO1_104570	A0A2H3IF81	A0A2H3HYU1	Nucleic acid-binding, OB-fold.	Ribosomal protein L21e.	0.999
PENO1_053960	PENO1_046400	A0A2H3ID01	A0A2H3IF81	Ribosomal protein L6, conserved site-2.	Nucleic acid-binding, OB-fold.	0.999
PENO1_053960	PENO1_055940	A0A2H3ID01	A0A2H3IB88	Ribosomal protein L6, conserved site-2.	Ribosomal protein L14.	0.999
PENO1_053960	PENO1_058990	A0A2H3ID01	A0A2H3IC99	Ribosomal protein L6, conserved site-2.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
PENO1_053960	PENO1_061910	A0A2H3ID01	A0A2H3IAT2	Ribosomal protein L6, conserved site-2.	Ribosomal protein L32e.	0.999
PENO1_053960	PENO1_070930	A0A2H3ID01	A0A2H3IEJ1	Ribosomal protein L6, conserved site-2.	Ribosomal protein L25/L23.	0.999
PENO1_053960	PENO1_077850	A0A2H3ID01	A0A2H3I5P8	Ribosomal protein L6, conserved site-2.	Ribosomal protein L5; Belongs to the universal ribosomal protein uL5 family.	0.999
PENO1_053960	PENO1_080800	A0A2H3ID01	A0A2H3I686	Ribosomal protein L6, conserved site-2.	Ribosomal protein L30e.	0.999
PENO1_053960	PENO1_084540	A0A2H3ID01	A0A2H3I5B9	Ribosomal protein L6, conserved site-2.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.998
PENO1_053960	PENO1_092750	A0A2H3ID01	A0A2H3I379	Ribosomal protein L6, conserved site-2.	Ribosomal protein L26/L24P, eukaryotic/archaeal.	0.999
PENO1_053960	PENO1_104570	A0A2H3ID01	A0A2H3HYU1	Ribosomal protein L6, conserved site-2.	Ribosomal protein L21e.	0.999