STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PENO1_044470NAD-dependent epimerase/dehydratase. (323 aa)    
Predicted Functional Partners:
PENO1_068740
Pyridoxal phosphate-dependent transferase, major region, subdomain 2.
   
 
 0.761
PENO1_032120
Nucleotide sugar dehydrogenase.
  
 0.729
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.709
PENO1_085620
Ribosomal protein S19, superfamily; Belongs to the universal ribosomal protein uS19 family.
   
  0.703
PENO1_028210
Ribosomal protein S14.
   
  0.703
PENO1_101510
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
  0.691
PENO1_011620
K Homology, prokaryotic type; Belongs to the universal ribosomal protein uS3 family.
   
  0.682
PENO1_055260
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
  0.678
PENO1_070240
Nucleic acid-binding, OB-fold.
   
  0.671
PENO1_035620
Winged helix-turn-helix transcription repressor DNA-binding.
   
  0.670
Your Current Organism:
Penicillium sp. occitanis
NCBI taxonomy Id: 290292
Other names: P. sp. 'occitanis', Penicillium occitanis, Penicillium sp. 'occitanis'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.