STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PENO1_035880Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (290 aa)    
Predicted Functional Partners:
PENO1_053220
Zinc finger, RING/FYVE/PHD-type.
  
 0.997
PENO1_041670
Cdk-activating kinase assembly factor (MAT1).
  
 0.995
PENO1_010300
Xeroderma pigmentosum group B protein (XP-B).
    
 0.994
PENO1_053460
Transcription initiation factor IIF, beta subunit.
  
 0.993
PENO1_026960
Von Willebrand factor, type A.
   
 0.993
PENO1_084770
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.992
PENO1_048590
Helicase-like, DEXD box c2 type.
    
 0.992
PENO1_033200
Zinc finger, PHD-finger.
    
 0.992
PENO1_021990
Transcription factor Tfb4.
    
 0.992
PENO1_060270
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.990
Your Current Organism:
Penicillium sp. occitanis
NCBI taxonomy Id: 290292
Other names: P. sp. 'occitanis', Penicillium occitanis, Penicillium sp. 'occitanis'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.