Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PENO1_004470 | PENO1_028440 | A0A2H3J7D1 | A0A2H3IRM5 | RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.961 |
| PENO1_004470 | PENO1_039360 | A0A2H3J7D1 | A0A2H3IUI6 | RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. | RNA polymerase II, Rpb4, core. | 0.927 |
| PENO1_004470 | PENO1_048460 | A0A2H3J7D1 | A0A2H3IUK2 | RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. | DNA-directed RNA polymerase, M/15kDa subunit. | 0.880 |
| PENO1_004470 | PENO1_053460 | A0A2H3J7D1 | A0A2H3IT69 | RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. | Transcription initiation factor IIF, beta subunit. | 0.945 |
| PENO1_004470 | PENO1_078260 | A0A2H3J7D1 | A0A2H3INK0 | RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. | Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. | 0.992 |
| PENO1_004470 | PENO1_080190 | A0A2H3J7D1 | A0A2H3IKI5 | RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. | DNA-directed RNA polymerase, dimerization. | 0.971 |
| PENO1_004470 | PENO1_085330 | A0A2H3J7D1 | A0A2H3IJ38 | RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. | Transcription factor TFIIB. | 0.798 |
| PENO1_028440 | PENO1_004470 | A0A2H3IRM5 | A0A2H3J7D1 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. | 0.961 |
| PENO1_028440 | PENO1_033200 | A0A2H3IRM5 | A0A2H3IIW6 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Zinc finger, PHD-finger. | 0.988 |
| PENO1_028440 | PENO1_035880 | A0A2H3IRM5 | A0A2H3IH57 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. | 0.976 |
| PENO1_028440 | PENO1_039360 | A0A2H3IRM5 | A0A2H3IUI6 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase II, Rpb4, core. | 0.996 |
| PENO1_028440 | PENO1_048460 | A0A2H3IRM5 | A0A2H3IUK2 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, M/15kDa subunit. | 0.996 |
| PENO1_028440 | PENO1_053220 | A0A2H3IRM5 | A0A2H3IC00 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Zinc finger, RING/FYVE/PHD-type. | 0.983 |
| PENO1_028440 | PENO1_053460 | A0A2H3IRM5 | A0A2H3IT69 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Transcription initiation factor IIF, beta subunit. | 0.994 |
| PENO1_028440 | PENO1_078260 | A0A2H3IRM5 | A0A2H3INK0 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. | 0.994 |
| PENO1_028440 | PENO1_080190 | A0A2H3IRM5 | A0A2H3IKI5 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, dimerization. | 0.999 |
| PENO1_028440 | PENO1_085330 | A0A2H3IRM5 | A0A2H3IJ38 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Transcription factor TFIIB. | 0.992 |
| PENO1_033200 | PENO1_028440 | A0A2H3IIW6 | A0A2H3IRM5 | Zinc finger, PHD-finger. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.988 |
| PENO1_033200 | PENO1_035880 | A0A2H3IIW6 | A0A2H3IH57 | Zinc finger, PHD-finger. | Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. | 0.992 |
| PENO1_033200 | PENO1_039360 | A0A2H3IIW6 | A0A2H3IUI6 | Zinc finger, PHD-finger. | RNA polymerase II, Rpb4, core. | 0.985 |
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