STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PENO1_066080ABC transporter, integral membrane type 1. (1436 aa)    
Predicted Functional Partners:
PENO1_010980
Ubiquitin carboxyl-terminal hydrolase.
    
  0.587
PENO1_083120
ATPase, AAA-type, core.
    
  0.532
PENO1_019070
ATPase, AAA-type, core; Belongs to the AAA ATPase family.
    
  0.532
PENO1_059380
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
  0.515
PENO1_109790
Clathrin coat associated protein AP-50; Belongs to the adaptor complexes medium subunit family.
    
  0.511
PENO1_010740
Zinc finger, RING-type.
    
  0.503
PENO1_084510
Guanine-nucleotide dissociation stimulator CDC25.
    
  0.497
PENO1_049630
Ubiquitin-conjugating enzyme, E2; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.497
PENO1_032610
ENTH/VHS.
    
  0.467
PENO1_021840
Dynein heavy chain, domain-2.
    
  0.450
Your Current Organism:
Penicillium sp. occitanis
NCBI taxonomy Id: 290292
Other names: P. sp. 'occitanis', Penicillium occitanis, Penicillium sp. 'occitanis'
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