STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PENO1_056350Oxoglutarate/iron-dependent dioxygenase. (375 aa)    
Predicted Functional Partners:
PENO1_018860
Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.
   
 0.627
PENO1_003520
Autophagy-related protein 17.
    
 0.610
PENO1_043300
Oxoglutarate/iron-dependent dioxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.495
PENO1_062180
Oxoglutarate/iron-dependent dioxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.415
Your Current Organism:
Penicillium sp. occitanis
NCBI taxonomy Id: 290292
Other names: P. sp. 'occitanis', Penicillium occitanis, Penicillium sp. 'occitanis'
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.