PENO1_034960 protein (Penicillium sp. occitanis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PENO1_034960

Uncharacterized protein. (349 aa)

Predicted Functional Partners:

PENO1_012970

0.987

PENO1_050250

0.904

PENO1_026790

0.904

PENO1_063870

0.837

PENO1_046690

0.837

PENO1_045130

0.837

PENO1_035720

0.837

PENO1_055020

0.837

PENO1_016590

0.837

PENO1_024190

0.837

Your Current Organism:

Penicillium sp. occitanis

NCBI taxonomy Id: 290292
Other names: P. sp. 'occitanis', Penicillium occitanis, Penicillium sp. 'occitanis'

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PENO1_012970	PENO1_016590	A0A2H3INJ7	A0A2H3IUQ8	Rho GTPase activation protein.	Small GTPase superfamily, Rho type.	0.999
PENO1_012970	PENO1_024190	A0A2H3INJ7	A0A2H3IYT3	Rho GTPase activation protein.	Small GTPase superfamily, Ras type.	0.999
PENO1_012970	PENO1_034960	A0A2H3INJ7	A0A2H3IVL8	Rho GTPase activation protein.	Uncharacterized protein.	0.987
PENO1_012970	PENO1_035720	A0A2H3INJ7	A0A2H3IGV0	Rho GTPase activation protein.	FAD dependent oxidoreductase.	0.999
PENO1_012970	PENO1_045130	A0A2H3INJ7	A0A2H3IFM8	Rho GTPase activation protein.	Small GTPase superfamily, Rho type.	0.999
PENO1_012970	PENO1_046690	A0A2H3INJ7	A0A2H3IDT7	Rho GTPase activation protein.	Small GTPase superfamily, Ras type.	0.999
PENO1_012970	PENO1_055020	A0A2H3INJ7	A0A2H3IQ42	Rho GTPase activation protein.	Small GTPase superfamily, Rho type.	0.999
PENO1_012970	PENO1_063870	A0A2H3INJ7	A0A2H3IA64	Rho GTPase activation protein.	Small GTPase superfamily, Ras type.	0.999
PENO1_016590	PENO1_012970	A0A2H3IUQ8	A0A2H3INJ7	Small GTPase superfamily, Rho type.	Rho GTPase activation protein.	0.999
PENO1_016590	PENO1_024190	A0A2H3IUQ8	A0A2H3IYT3	Small GTPase superfamily, Rho type.	Small GTPase superfamily, Ras type.	0.765
PENO1_016590	PENO1_026790	A0A2H3IUQ8	A0A2H3IJC9	Small GTPase superfamily, Rho type.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.664
PENO1_016590	PENO1_034960	A0A2H3IUQ8	A0A2H3IVL8	Small GTPase superfamily, Rho type.	Uncharacterized protein.	0.837
PENO1_016590	PENO1_045130	A0A2H3IUQ8	A0A2H3IFM8	Small GTPase superfamily, Rho type.	Small GTPase superfamily, Rho type.	0.791
PENO1_016590	PENO1_046690	A0A2H3IUQ8	A0A2H3IDT7	Small GTPase superfamily, Rho type.	Small GTPase superfamily, Ras type.	0.792
PENO1_016590	PENO1_050250	A0A2H3IUQ8	A0A2H3ICX4	Small GTPase superfamily, Rho type.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.724
PENO1_016590	PENO1_055020	A0A2H3IUQ8	A0A2H3IQ42	Small GTPase superfamily, Rho type.	Small GTPase superfamily, Rho type.	0.452
PENO1_016590	PENO1_063870	A0A2H3IUQ8	A0A2H3IA64	Small GTPase superfamily, Rho type.	Small GTPase superfamily, Ras type.	0.807
PENO1_024190	PENO1_012970	A0A2H3IYT3	A0A2H3INJ7	Small GTPase superfamily, Ras type.	Rho GTPase activation protein.	0.999
PENO1_024190	PENO1_016590	A0A2H3IYT3	A0A2H3IUQ8	Small GTPase superfamily, Ras type.	Small GTPase superfamily, Rho type.	0.765
PENO1_024190	PENO1_026790	A0A2H3IYT3	A0A2H3IJC9	Small GTPase superfamily, Ras type.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.664