STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLP1mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (573 aa)    
Predicted Functional Partners:
PENO1_082600
Nucleotide-binding, alpha-beta plait.
    
 0.997
PENO1_011320
RNA polymerase II, large subunit, CTD.
    
 0.997
PENO1_081270
Nucleotide-binding, alpha-beta plait.
   
 0.990
PENO1_038120
Pre-mRNA polyadenylation factor Fip1.
    
 0.951
PENO1_090350
Zinc finger, CCCH-type.
    
 0.950
PENO1_078400
Tetratricopeptide-like helical.
    
 
 0.948
PENO1_007740
RNA-processing protein, HAT helix.
    
 0.937
PENO1_054060
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.919
PENO1_102400
Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term.
   
 0.911
PENO1_105430
Single-stranded nucleic acid binding R3H.
   
 0.893
Your Current Organism:
Penicillium sp. occitanis
NCBI taxonomy Id: 290292
Other names: P. sp. 'occitanis', Penicillium occitanis, Penicillium sp. 'occitanis'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.