STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PENO1_038600Uncharacterized protein; Belongs to the DEAD box helicase family. (498 aa)    
Predicted Functional Partners:
PENO1_065690
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.
    
 0.996
PENO1_031460
Ribonucleoprotein LSM domain, eukaryotic/archaea-type.
    
 0.994
PENO1_044190
Topoisomerase II-associated protein PAT1.
   
 0.994
PENO1_044430
Ribonucleoprotein LSM domain, eukaryotic/archaea-type.
    
 0.993
PENO1_101090
FFD box.
   
 
 0.992
PENO1_008760
Dcp1-like decapping.
   
 0.985
PENO1_016750
Uncharacterized protein.
   
 0.976
PENO1_017090
Ribonuclease CAF1.
   
 0.976
PENO1_035420
Endonuclease/exonuclease/phosphatase.
    
 0.972
PENO1_038290
RNA recognition motif domain, eukaryote.
    
 0.971
Your Current Organism:
Penicillium sp. occitanis
NCBI taxonomy Id: 290292
Other names: P. sp. 'occitanis', Penicillium occitanis, Penicillium sp. 'occitanis'
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