PENO1_026040 protein (Penicillium sp. occitanis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PENO1_026040

ATPase, AAA-type, core; Belongs to the AAA ATPase family. (389 aa)

Predicted Functional Partners:

PENO1_093910

0.999

PENO1_059630

0.999

PENO1_055080

0.999

PENO1_039120

0.999

PENO1_011410

0.999

PENO1_017290

0.999

PENO1_017030

0.999

PENO1_004500

0.999

PENO1_077090

0.998

PENO1_076280

0.998

Your Current Organism:

Penicillium sp. occitanis

NCBI taxonomy Id: 290292
Other names: P. sp. 'occitanis', Penicillium occitanis, Penicillium sp. 'occitanis'

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PENO1_004500	PENO1_011410	A0A2H3J9E8	A0A2H3J2I9	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	JAB1/Mov34/MPN/PAD-1.	0.998
PENO1_004500	PENO1_017030	A0A2H3J9E8	A0A2H3J5V5	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	0.999
PENO1_004500	PENO1_017290	A0A2H3J9E8	A0A2H3J3H7	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	0.999
PENO1_004500	PENO1_026040	A0A2H3J9E8	A0A2H3J3B5	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	0.999
PENO1_004500	PENO1_039120	A0A2H3J9E8	A0A2H3IX82	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	0.999
PENO1_004500	PENO1_055080	A0A2H3J9E8	A0A2H3ISM8	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	Winged helix-turn-helix transcription repressor DNA-binding.	0.998
PENO1_004500	PENO1_059630	A0A2H3J9E8	A0A2H3INU6	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	JAB1/Mov34/MPN/PAD-1.	0.998
PENO1_004500	PENO1_076280	A0A2H3J9E8	A0A2H3I5X4	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.998
PENO1_004500	PENO1_077090	A0A2H3J9E8	A0A2H3I5M3	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	Proteasome subunit alpha type.	0.997
PENO1_004500	PENO1_093910	A0A2H3J9E8	A0A2H3IJ24	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	Von Willebrand factor, type A.	0.999
PENO1_011410	PENO1_004500	A0A2H3J2I9	A0A2H3J9E8	JAB1/Mov34/MPN/PAD-1.	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	0.998
PENO1_011410	PENO1_017030	A0A2H3J2I9	A0A2H3J5V5	JAB1/Mov34/MPN/PAD-1.	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	0.999
PENO1_011410	PENO1_017290	A0A2H3J2I9	A0A2H3J3H7	JAB1/Mov34/MPN/PAD-1.	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	0.999
PENO1_011410	PENO1_026040	A0A2H3J2I9	A0A2H3J3B5	JAB1/Mov34/MPN/PAD-1.	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	0.999
PENO1_011410	PENO1_039120	A0A2H3J2I9	A0A2H3IX82	JAB1/Mov34/MPN/PAD-1.	ATPase, AAA-type, core; Belongs to the AAA ATPase family.	0.999
PENO1_011410	PENO1_055080	A0A2H3J2I9	A0A2H3ISM8	JAB1/Mov34/MPN/PAD-1.	Winged helix-turn-helix transcription repressor DNA-binding.	0.999
PENO1_011410	PENO1_059630	A0A2H3J2I9	A0A2H3INU6	JAB1/Mov34/MPN/PAD-1.	JAB1/Mov34/MPN/PAD-1.	0.999
PENO1_011410	PENO1_076280	A0A2H3J2I9	A0A2H3I5X4	JAB1/Mov34/MPN/PAD-1.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
PENO1_011410	PENO1_077090	A0A2H3J2I9	A0A2H3I5M3	JAB1/Mov34/MPN/PAD-1.	Proteasome subunit alpha type.	0.998
PENO1_011410	PENO1_093910	A0A2H3J2I9	A0A2H3IJ24	JAB1/Mov34/MPN/PAD-1.	Von Willebrand factor, type A.	0.999