R1B2Y5_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1B2Y5_EMIHU

Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (282 aa)

Predicted Functional Partners:

Ras1-2

0.523

R1FQP2_EMIHU

0.523

R1D827_EMIHU

0.498

R1DHH1_EMIHU

0.497

R1DJL6_EMIHU

0.497

R1EKP5_EMIHU

0.497

R1FJ09_EMIHU

0.486

R1CQG0_EMIHU

0.483

R1CRE7_EMIHU

0.483

R1BFD2_EMIHU

0.469

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1B2Y5_EMIHU	R1BFD2_EMIHU	R1B2Y5	R1BFD2	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	FHA domain-containing protein.	0.469
R1B2Y5_EMIHU	R1CQG0_EMIHU	R1B2Y5	R1CQG0	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.483
R1B2Y5_EMIHU	R1CRE7_EMIHU	R1B2Y5	R1CRE7	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	AAA_23 domain-containing protein.	0.483
R1B2Y5_EMIHU	R1D827_EMIHU	R1B2Y5	R1D827	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.498
R1B2Y5_EMIHU	R1DHH1_EMIHU	R1B2Y5	R1DHH1	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	3'-5' exonuclease domain-containing protein.	0.497
R1B2Y5_EMIHU	R1DJL6_EMIHU	R1B2Y5	R1DJL6	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.497
R1B2Y5_EMIHU	R1EKP5_EMIHU	R1B2Y5	R1EKP5	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.497
R1B2Y5_EMIHU	R1FJ09_EMIHU	R1B2Y5	R1FJ09	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Mre11_DNA_bind domain-containing protein.	0.486
R1B2Y5_EMIHU	R1FQP2_EMIHU	R1B2Y5	R1FQP2	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.523
R1B2Y5_EMIHU	Ras1-2	R1B2Y5	R1E4R6	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Ras family GTPase.	0.523
R1BFD2_EMIHU	R1B2Y5_EMIHU	R1BFD2	R1B2Y5	FHA domain-containing protein.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.469
R1BFD2_EMIHU	R1CQG0_EMIHU	R1BFD2	R1CQG0	FHA domain-containing protein.	Uncharacterized protein.	0.978
R1BFD2_EMIHU	R1CRE7_EMIHU	R1BFD2	R1CRE7	FHA domain-containing protein.	AAA_23 domain-containing protein.	0.978
R1BFD2_EMIHU	R1DHH1_EMIHU	R1BFD2	R1DHH1	FHA domain-containing protein.	3'-5' exonuclease domain-containing protein.	0.846
R1BFD2_EMIHU	R1DJL6_EMIHU	R1BFD2	R1DJL6	FHA domain-containing protein.	Uncharacterized protein.	0.846
R1BFD2_EMIHU	R1EKP5_EMIHU	R1BFD2	R1EKP5	FHA domain-containing protein.	Uncharacterized protein.	0.846
R1BFD2_EMIHU	R1FJ09_EMIHU	R1BFD2	R1FJ09	FHA domain-containing protein.	Mre11_DNA_bind domain-containing protein.	0.986
R1CQG0_EMIHU	R1B2Y5_EMIHU	R1CQG0	R1B2Y5	Uncharacterized protein.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.483
R1CQG0_EMIHU	R1BFD2_EMIHU	R1CQG0	R1BFD2	Uncharacterized protein.	FHA domain-containing protein.	0.978
R1CQG0_EMIHU	R1CRE7_EMIHU	R1CQG0	R1CRE7	Uncharacterized protein.	AAA_23 domain-containing protein.	0.472