R1B8X2_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1B8X2_EMIHU

Uncharacterized protein. (110 aa)

Predicted Functional Partners:

R1DAZ7_EMIHU

0.812

PAPR

0.809

UPMT1

0.801

R1EBV1_EMIHU

0.789

R1BJM5_EMIHU

0.722

R1DFS5_EMIHU

0.722

R1D0H4_EMIHU

0.720

R1EC67_EMIHU

0.720

R1BQD2_EMIHU

0.546

R1BX83_EMIHU

0.546

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PAPR	R1B8X2_EMIHU	R1F9I6	R1B8X2	3'-phosphoadenosine 5'-phosphosulfate reductase.	Uncharacterized protein.	0.809
PAPR	R1BJM5_EMIHU	R1F9I6	R1BJM5	3'-phosphoadenosine 5'-phosphosulfate reductase.	Inorganic pyrophosphatase.	0.997
PAPR	R1BQD2_EMIHU	R1F9I6	R1BQD2	3'-phosphoadenosine 5'-phosphosulfate reductase.	Uncharacterized protein; Belongs to the glycosyl hydrolase 43 family.	0.520
PAPR	R1BX83_EMIHU	R1F9I6	R1BX83	3'-phosphoadenosine 5'-phosphosulfate reductase.	Uncharacterized protein.	0.520
PAPR	R1DAZ7_EMIHU	R1F9I6	R1DAZ7	3'-phosphoadenosine 5'-phosphosulfate reductase.	Putative ATP-sulfurylase.	0.993
PAPR	R1DFS5_EMIHU	R1F9I6	R1DFS5	3'-phosphoadenosine 5'-phosphosulfate reductase.	Inorganic pyrophosphatase.	0.997
PAPR	R1EBV1_EMIHU	R1F9I6	R1EBV1	3'-phosphoadenosine 5'-phosphosulfate reductase.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.977
PAPR	UPMT1	R1F9I6	R1DNN9	3'-phosphoadenosine 5'-phosphosulfate reductase.	Uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.	0.943
R1B8X2_EMIHU	PAPR	R1B8X2	R1F9I6	Uncharacterized protein.	3'-phosphoadenosine 5'-phosphosulfate reductase.	0.809
R1B8X2_EMIHU	R1BJM5_EMIHU	R1B8X2	R1BJM5	Uncharacterized protein.	Inorganic pyrophosphatase.	0.722
R1B8X2_EMIHU	R1BQD2_EMIHU	R1B8X2	R1BQD2	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 43 family.	0.546
R1B8X2_EMIHU	R1BX83_EMIHU	R1B8X2	R1BX83	Uncharacterized protein.	Uncharacterized protein.	0.546
R1B8X2_EMIHU	R1D0H4_EMIHU	R1B8X2	R1D0H4	Uncharacterized protein.	Uncharacterized protein.	0.720
R1B8X2_EMIHU	R1DAZ7_EMIHU	R1B8X2	R1DAZ7	Uncharacterized protein.	Putative ATP-sulfurylase.	0.812
R1B8X2_EMIHU	R1DFS5_EMIHU	R1B8X2	R1DFS5	Uncharacterized protein.	Inorganic pyrophosphatase.	0.722
R1B8X2_EMIHU	R1EBV1_EMIHU	R1B8X2	R1EBV1	Uncharacterized protein.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.789
R1B8X2_EMIHU	R1EC67_EMIHU	R1B8X2	R1EC67	Uncharacterized protein.	Uncharacterized protein.	0.720
R1B8X2_EMIHU	UPMT1	R1B8X2	R1DNN9	Uncharacterized protein.	Uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.	0.801
R1BJM5_EMIHU	PAPR	R1BJM5	R1F9I6	Inorganic pyrophosphatase.	3'-phosphoadenosine 5'-phosphosulfate reductase.	0.997
R1BJM5_EMIHU	R1B8X2_EMIHU	R1BJM5	R1B8X2	Inorganic pyrophosphatase.	Uncharacterized protein.	0.722