R1BZK8_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1BZK8_EMIHU

S4 RNA-binding domain-containing protein. (181 aa)

Predicted Functional Partners:

R1CME4_EMIHU

0.999

R1DCK2_EMIHU

0.999

R1CHH6_EMIHU

0.998

R1DK89_EMIHU

0.998

R1EIS3_EMIHU

0.998

R1FEL1_EMIHU

0.998

R1CGC7_EMIHU

0.997

R1DG24_EMIHU

0.997

R1DZL0_EMIHU

0.997

R1EGX6_EMIHU

0.997

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1BZK8_EMIHU	R1CGC7_EMIHU	R1BZK8	R1CGC7	S4 RNA-binding domain-containing protein.	40S ribosomal protein S4.	0.997
R1BZK8_EMIHU	R1CHH6_EMIHU	R1BZK8	R1CHH6	S4 RNA-binding domain-containing protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.998
R1BZK8_EMIHU	R1CME4_EMIHU	R1BZK8	R1CME4	S4 RNA-binding domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
R1BZK8_EMIHU	R1DCK2_EMIHU	R1BZK8	R1DCK2	S4 RNA-binding domain-containing protein.	Brix domain-containing protein.	0.999
R1BZK8_EMIHU	R1DG24_EMIHU	R1BZK8	R1DG24	S4 RNA-binding domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.997
R1BZK8_EMIHU	R1DK89_EMIHU	R1BZK8	R1DK89	S4 RNA-binding domain-containing protein.	Sas10 domain-containing protein.	0.998
R1BZK8_EMIHU	R1DZL0_EMIHU	R1BZK8	R1DZL0	S4 RNA-binding domain-containing protein.	Uncharacterized protein.	0.997
R1BZK8_EMIHU	R1EGX6_EMIHU	R1BZK8	R1EGX6	S4 RNA-binding domain-containing protein.	Uncharacterized protein.	0.997
R1BZK8_EMIHU	R1EIS3_EMIHU	R1BZK8	R1EIS3	S4 RNA-binding domain-containing protein.	Uncharacterized protein.	0.998
R1BZK8_EMIHU	R1FEL1_EMIHU	R1BZK8	R1FEL1	S4 RNA-binding domain-containing protein.	HMG box domain-containing protein.	0.998
R1CGC7_EMIHU	R1BZK8_EMIHU	R1CGC7	R1BZK8	40S ribosomal protein S4.	S4 RNA-binding domain-containing protein.	0.997
R1CGC7_EMIHU	R1CHH6_EMIHU	R1CGC7	R1CHH6	40S ribosomal protein S4.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
R1CGC7_EMIHU	R1CME4_EMIHU	R1CGC7	R1CME4	40S ribosomal protein S4.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
R1CGC7_EMIHU	R1DCK2_EMIHU	R1CGC7	R1DCK2	40S ribosomal protein S4.	Brix domain-containing protein.	0.922
R1CGC7_EMIHU	R1DG24_EMIHU	R1CGC7	R1DG24	40S ribosomal protein S4.	WD_REPEATS_REGION domain-containing protein.	0.923
R1CGC7_EMIHU	R1DK89_EMIHU	R1CGC7	R1DK89	40S ribosomal protein S4.	Sas10 domain-containing protein.	0.922
R1CGC7_EMIHU	R1DZL0_EMIHU	R1CGC7	R1DZL0	40S ribosomal protein S4.	Uncharacterized protein.	0.999
R1CGC7_EMIHU	R1EGX6_EMIHU	R1CGC7	R1EGX6	40S ribosomal protein S4.	Uncharacterized protein.	0.999
R1CGC7_EMIHU	R1EIS3_EMIHU	R1CGC7	R1EIS3	40S ribosomal protein S4.	Uncharacterized protein.	0.970
R1CGC7_EMIHU	R1FEL1_EMIHU	R1CGC7	R1FEL1	40S ribosomal protein S4.	HMG box domain-containing protein.	0.999