Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PSBO_2 | R1C4I1_EMIHU | R1D369 | R1C4I1 | Oxygen-evolving enhancer protein 1 of photosystem II. | Uncharacterized protein. | 0.512 |
PSBO_2 | psbH | R1D369 | Q4G3C2 | Oxygen-evolving enhancer protein 1 of photosystem II. | Photosystem II reaction center protein H; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. | 0.993 |
R1C4I1_EMIHU | PSBO_2 | R1C4I1 | R1D369 | Uncharacterized protein. | Oxygen-evolving enhancer protein 1 of photosystem II. | 0.512 |
R1C4I1_EMIHU | R1CZ58_EMIHU | R1C4I1 | R1CZ58 | Uncharacterized protein. | Rhomboid domain-containing protein. | 0.489 |
R1C4I1_EMIHU | R1D161_EMIHU | R1C4I1 | R1D161 | Uncharacterized protein. | Cyclin N-terminal domain-containing protein. | 0.489 |
R1C4I1_EMIHU | R1D3I3_EMIHU | R1C4I1 | R1D3I3 | Uncharacterized protein. | Uncharacterized protein. | 0.433 |
R1C4I1_EMIHU | R1FJK1_EMIHU | R1C4I1 | R1FJK1 | Uncharacterized protein. | Uncharacterized protein. | 0.473 |
R1C4I1_EMIHU | psbH | R1C4I1 | Q4G3C2 | Uncharacterized protein. | Photosystem II reaction center protein H; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. | 0.429 |
R1CZ58_EMIHU | R1C4I1_EMIHU | R1CZ58 | R1C4I1 | Rhomboid domain-containing protein. | Uncharacterized protein. | 0.489 |
R1D161_EMIHU | R1C4I1_EMIHU | R1D161 | R1C4I1 | Cyclin N-terminal domain-containing protein. | Uncharacterized protein. | 0.489 |
R1D3I3_EMIHU | R1C4I1_EMIHU | R1D3I3 | R1C4I1 | Uncharacterized protein. | Uncharacterized protein. | 0.433 |
R1FJK1_EMIHU | R1C4I1_EMIHU | R1FJK1 | R1C4I1 | Uncharacterized protein. | Uncharacterized protein. | 0.473 |
psbH | PSBO_2 | Q4G3C2 | R1D369 | Photosystem II reaction center protein H; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. | Oxygen-evolving enhancer protein 1 of photosystem II. | 0.993 |
psbH | R1C4I1_EMIHU | Q4G3C2 | R1C4I1 | Photosystem II reaction center protein H; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. | Uncharacterized protein. | 0.429 |