R1CDZ9_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1CDZ9_EMIHU

NTF2 domain-containing protein. (127 aa)

Predicted Functional Partners:

R1BYK7_EMIHU

0.996

R1E7X8_EMIHU

0.996

R1FG68_EMIHU

0.996

R1DAU7_EMIHU

0.989

R1G8L0_EMIHU

0.985

R1DNF7_EMIHU

0.984

R1FV81_EMIHU

0.983

R1DKZ3_EMIHU

0.968

R1DRX3_EMIHU

0.955

RAN-2

0.955

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1BYK7_EMIHU	R1CDZ9_EMIHU	R1BYK7	R1CDZ9	Uncharacterized protein.	NTF2 domain-containing protein.	0.996
R1BYK7_EMIHU	R1DAU7_EMIHU	R1BYK7	R1DAU7	Uncharacterized protein.	Uncharacterized protein.	0.999
R1BYK7_EMIHU	R1DKZ3_EMIHU	R1BYK7	R1DKZ3	Uncharacterized protein.	Uncharacterized protein.	0.964
R1BYK7_EMIHU	R1DNF7_EMIHU	R1BYK7	R1DNF7	Uncharacterized protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.999
R1BYK7_EMIHU	R1E7X8_EMIHU	R1BYK7	R1E7X8	Uncharacterized protein.	Uncharacterized protein.	0.975
R1BYK7_EMIHU	R1FG68_EMIHU	R1BYK7	R1FG68	Uncharacterized protein.	Uncharacterized protein.	0.978
R1BYK7_EMIHU	R1FV81_EMIHU	R1BYK7	R1FV81	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.999
R1BYK7_EMIHU	R1G8L0_EMIHU	R1BYK7	R1G8L0	Uncharacterized protein.	Uncharacterized protein.	0.999
R1CDZ9_EMIHU	R1BYK7_EMIHU	R1CDZ9	R1BYK7	NTF2 domain-containing protein.	Uncharacterized protein.	0.996
R1CDZ9_EMIHU	R1DAU7_EMIHU	R1CDZ9	R1DAU7	NTF2 domain-containing protein.	Uncharacterized protein.	0.989
R1CDZ9_EMIHU	R1DKZ3_EMIHU	R1CDZ9	R1DKZ3	NTF2 domain-containing protein.	Uncharacterized protein.	0.968
R1CDZ9_EMIHU	R1DNF7_EMIHU	R1CDZ9	R1DNF7	NTF2 domain-containing protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.984
R1CDZ9_EMIHU	R1DRX3_EMIHU	R1CDZ9	R1DRX3	NTF2 domain-containing protein.	Uncharacterized protein.	0.955
R1CDZ9_EMIHU	R1E7X8_EMIHU	R1CDZ9	R1E7X8	NTF2 domain-containing protein.	Uncharacterized protein.	0.996
R1CDZ9_EMIHU	R1FG68_EMIHU	R1CDZ9	R1FG68	NTF2 domain-containing protein.	Uncharacterized protein.	0.996
R1CDZ9_EMIHU	R1FV81_EMIHU	R1CDZ9	R1FV81	NTF2 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.983
R1CDZ9_EMIHU	R1G8L0_EMIHU	R1CDZ9	R1G8L0	NTF2 domain-containing protein.	Uncharacterized protein.	0.985
R1CDZ9_EMIHU	RAN-2	R1CDZ9	R1DWC3	NTF2 domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.955
R1DAU7_EMIHU	R1BYK7_EMIHU	R1DAU7	R1BYK7	Uncharacterized protein.	Uncharacterized protein.	0.999
R1DAU7_EMIHU	R1CDZ9_EMIHU	R1DAU7	R1CDZ9	Uncharacterized protein.	NTF2 domain-containing protein.	0.989