R1CUL7_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1CUL7_EMIHU

Uncharacterized protein. (371 aa)

Predicted Functional Partners:

R1DM14_EMIHU

0.801

R1BD52_EMIHU

0.731

R1ETH7_EMIHU

0.696

R1EHD1_EMIHU

0.688

R1E0P5_EMIHU

0.676

R1E4U8_EMIHU

0.674

R1DNK8_EMIHU

0.670

R1C8W8_EMIHU

0.638

R1DW13_EMIHU

0.638

R1FCP4_EMIHU

0.638

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1BD52_EMIHU	R1C8W8_EMIHU	R1BD52	R1C8W8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Biotin carboxylation domain-containing protein.	0.791
R1BD52_EMIHU	R1CUL7_EMIHU	R1BD52	R1CUL7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.731
R1BD52_EMIHU	R1DM14_EMIHU	R1BD52	R1DM14	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
R1BD52_EMIHU	R1DNK8_EMIHU	R1BD52	R1DNK8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RPOL4c domain-containing protein.	0.997
R1BD52_EMIHU	R1DW13_EMIHU	R1BD52	R1DW13	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Methylcrotonoyl-CoA carboxylase.	0.791
R1BD52_EMIHU	R1E0P5_EMIHU	R1BD52	R1E0P5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DUF2236 domain-containing protein.	0.997
R1BD52_EMIHU	R1E4U8_EMIHU	R1BD52	R1E4U8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.998
R1BD52_EMIHU	R1EHD1_EMIHU	R1BD52	R1EHD1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerases II 24 kDa polypeptide.	0.998
R1BD52_EMIHU	R1ETH7_EMIHU	R1BD52	R1ETH7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.999
R1BD52_EMIHU	R1FCP4_EMIHU	R1BD52	R1FCP4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.791
R1C8W8_EMIHU	R1BD52_EMIHU	R1C8W8	R1BD52	Biotin carboxylation domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.791
R1C8W8_EMIHU	R1CUL7_EMIHU	R1C8W8	R1CUL7	Biotin carboxylation domain-containing protein.	Uncharacterized protein.	0.638
R1C8W8_EMIHU	R1DM14_EMIHU	R1C8W8	R1DM14	Biotin carboxylation domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.791
R1C8W8_EMIHU	R1DNK8_EMIHU	R1C8W8	R1DNK8	Biotin carboxylation domain-containing protein.	RPOL4c domain-containing protein.	0.774
R1C8W8_EMIHU	R1E0P5_EMIHU	R1C8W8	R1E0P5	Biotin carboxylation domain-containing protein.	DUF2236 domain-containing protein.	0.783
R1C8W8_EMIHU	R1E4U8_EMIHU	R1C8W8	R1E4U8	Biotin carboxylation domain-containing protein.	Uncharacterized protein.	0.781
R1C8W8_EMIHU	R1EHD1_EMIHU	R1C8W8	R1EHD1	Biotin carboxylation domain-containing protein.	DNA-directed RNA polymerases II 24 kDa polypeptide.	0.808
R1C8W8_EMIHU	R1ETH7_EMIHU	R1C8W8	R1ETH7	Biotin carboxylation domain-containing protein.	Uncharacterized protein.	0.821
R1CUL7_EMIHU	R1BD52_EMIHU	R1CUL7	R1BD52	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.731
R1CUL7_EMIHU	R1C8W8_EMIHU	R1CUL7	R1C8W8	Uncharacterized protein.	Biotin carboxylation domain-containing protein.	0.638