R1CV51_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1CV51_EMIHU

Autophagy_act_C domain-containing protein. (221 aa)

Predicted Functional Partners:

R1CVW6_EMIHU

0.988

R1FEV0_EMIHU

0.915

R1DGX0_EMIHU

0.900

Atg5

0.732

R1D8V1_EMIHU

0.732

R1G200_EMIHU

0.549

R1F4A6_EMIHU

0.531

R1BGX8_EMIHU

0.529

R1C794_EMIHU

0.526

R1DG21_EMIHU

0.526

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atg5	R1BGX8_EMIHU	R1D7Q4	R1BGX8	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.537
Atg5	R1C794_EMIHU	R1D7Q4	R1C794	Autophagy protein 5; Involved in autophagic vesicle formation.	E2_bind domain-containing protein.	0.552
Atg5	R1CV51_EMIHU	R1D7Q4	R1CV51	Autophagy protein 5; Involved in autophagic vesicle formation.	Autophagy_act_C domain-containing protein.	0.732
Atg5	R1CVW6_EMIHU	R1D7Q4	R1CVW6	Autophagy protein 5; Involved in autophagic vesicle formation.	Ubiquitin-like protein ATG12.	0.998
Atg5	R1D8V1_EMIHU	R1D7Q4	R1D8V1	Autophagy protein 5; Involved in autophagic vesicle formation.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.900
Atg5	R1DG21_EMIHU	R1D7Q4	R1DG21	Autophagy protein 5; Involved in autophagic vesicle formation.	E2_bind domain-containing protein.	0.552
Atg5	R1DGX0_EMIHU	R1D7Q4	R1DGX0	Autophagy protein 5; Involved in autophagic vesicle formation.	Autophagy_act_C domain-containing protein.	0.732
Atg5	R1F4A6_EMIHU	R1D7Q4	R1F4A6	Autophagy protein 5; Involved in autophagic vesicle formation.	APG6 domain-containing protein.	0.835
Atg5	R1FEV0_EMIHU	R1D7Q4	R1FEV0	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.872
Atg5	R1G200_EMIHU	R1D7Q4	R1G200	Autophagy protein 5; Involved in autophagic vesicle formation.	Autophagy-related protein 3.	0.998
R1BGX8_EMIHU	Atg5	R1BGX8	R1D7Q4	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.537
R1BGX8_EMIHU	R1CV51_EMIHU	R1BGX8	R1CV51	Uncharacterized protein.	Autophagy_act_C domain-containing protein.	0.529
R1BGX8_EMIHU	R1CVW6_EMIHU	R1BGX8	R1CVW6	Uncharacterized protein.	Ubiquitin-like protein ATG12.	0.580
R1BGX8_EMIHU	R1D8V1_EMIHU	R1BGX8	R1D8V1	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.537
R1BGX8_EMIHU	R1DGX0_EMIHU	R1BGX8	R1DGX0	Uncharacterized protein.	Autophagy_act_C domain-containing protein.	0.529
R1BGX8_EMIHU	R1F4A6_EMIHU	R1BGX8	R1F4A6	Uncharacterized protein.	APG6 domain-containing protein.	0.580
R1BGX8_EMIHU	R1FEV0_EMIHU	R1BGX8	R1FEV0	Uncharacterized protein.	Uncharacterized protein.	0.580
R1BGX8_EMIHU	R1G200_EMIHU	R1BGX8	R1G200	Uncharacterized protein.	Autophagy-related protein 3.	0.580
R1C794_EMIHU	Atg5	R1C794	R1D7Q4	E2_bind domain-containing protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.552
R1C794_EMIHU	R1CV51_EMIHU	R1C794	R1CV51	E2_bind domain-containing protein.	Autophagy_act_C domain-containing protein.	0.526