R1CX13_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1CX13_EMIHU

SNF2_N domain-containing protein. (513 aa)

Predicted Functional Partners:

R1F7D1_EMIHU

0.723

R1E340_EMIHU

0.637

R1DM16_EMIHU

0.596

R1DLK3_EMIHU

0.594

R1EDQ4_EMIHU

0.594

R1DDI2_EMIHU

0.592

R1F8I1_EMIHU

0.591

R1EZI7_EMIHU

0.589

R1G7T0_EMIHU

0.588

R1DNL7_EMIHU

0.587

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1CX13_EMIHU	R1DDI2_EMIHU	R1CX13	R1DDI2	SNF2_N domain-containing protein.	Uncharacterized protein.	0.592
R1CX13_EMIHU	R1DLK3_EMIHU	R1CX13	R1DLK3	SNF2_N domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.594
R1CX13_EMIHU	R1DM16_EMIHU	R1CX13	R1DM16	SNF2_N domain-containing protein.	Helicase C-terminal domain-containing protein.	0.596
R1CX13_EMIHU	R1DNL7_EMIHU	R1CX13	R1DNL7	SNF2_N domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.587
R1CX13_EMIHU	R1E340_EMIHU	R1CX13	R1E340	SNF2_N domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.637
R1CX13_EMIHU	R1EDQ4_EMIHU	R1CX13	R1EDQ4	SNF2_N domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.594
R1CX13_EMIHU	R1EZI7_EMIHU	R1CX13	R1EZI7	SNF2_N domain-containing protein.	Uncharacterized protein.	0.589
R1CX13_EMIHU	R1F7D1_EMIHU	R1CX13	R1F7D1	SNF2_N domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.723
R1CX13_EMIHU	R1F8I1_EMIHU	R1CX13	R1F8I1	SNF2_N domain-containing protein.	Uncharacterized protein.	0.591
R1CX13_EMIHU	R1G7T0_EMIHU	R1CX13	R1G7T0	SNF2_N domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.588
R1DDI2_EMIHU	R1CX13_EMIHU	R1DDI2	R1CX13	Uncharacterized protein.	SNF2_N domain-containing protein.	0.592
R1DDI2_EMIHU	R1E340_EMIHU	R1DDI2	R1E340	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.518
R1DDI2_EMIHU	R1F7D1_EMIHU	R1DDI2	R1F7D1	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.530
R1DLK3_EMIHU	R1CX13_EMIHU	R1DLK3	R1CX13	Uncharacterized protein; Belongs to the actin family.	SNF2_N domain-containing protein.	0.594
R1DM16_EMIHU	R1CX13_EMIHU	R1DM16	R1CX13	Helicase C-terminal domain-containing protein.	SNF2_N domain-containing protein.	0.596
R1DM16_EMIHU	R1DNL7_EMIHU	R1DM16	R1DNL7	Helicase C-terminal domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.530
R1DM16_EMIHU	R1E340_EMIHU	R1DM16	R1E340	Helicase C-terminal domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.518
R1DM16_EMIHU	R1F7D1_EMIHU	R1DM16	R1F7D1	Helicase C-terminal domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.530
R1DM16_EMIHU	R1G7T0_EMIHU	R1DM16	R1G7T0	Helicase C-terminal domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.528
R1DNL7_EMIHU	R1CX13_EMIHU	R1DNL7	R1CX13	Helicase ATP-binding domain-containing protein.	SNF2_N domain-containing protein.	0.587