R1D1K9_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1D1K9_EMIHU

Uncharacterized protein. (160 aa)

Predicted Functional Partners:

R1EUN2_EMIHU

0.968

R1CWN5_EMIHU

0.963

R1F8P8_EMIHU

0.641

R1DFF3_EMIHU

0.622

R1DV79_EMIHU

0.621

R1FFH9_EMIHU

0.585

R1B4P3_EMIHU

0.556

R1DCR2_EMIHU

0.532

R1EFQ8_EMIHU

0.532

R1C4V4_EMIHU

0.514

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1B4P3_EMIHU	R1CWN5_EMIHU	R1B4P3	R1CWN5	Protoheme IX farnesyltransferase.	Fumarate reductase.	0.650
R1B4P3_EMIHU	R1D1K9_EMIHU	R1B4P3	R1D1K9	Protoheme IX farnesyltransferase.	Uncharacterized protein.	0.556
R1B4P3_EMIHU	R1DCR2_EMIHU	R1B4P3	R1DCR2	Protoheme IX farnesyltransferase.	Uncharacterized protein.	0.495
R1B4P3_EMIHU	R1DFF3_EMIHU	R1B4P3	R1DFF3	Protoheme IX farnesyltransferase.	HIG1 domain-containing protein.	0.563
R1B4P3_EMIHU	R1DV79_EMIHU	R1B4P3	R1DV79	Protoheme IX farnesyltransferase.	Uncharacterized protein.	0.694
R1B4P3_EMIHU	R1EFQ8_EMIHU	R1B4P3	R1EFQ8	Protoheme IX farnesyltransferase.	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit.	0.495
R1B4P3_EMIHU	R1EUN2_EMIHU	R1B4P3	R1EUN2	Protoheme IX farnesyltransferase.	Succinate dehydrogenase flavo protein subunit,subunit A Fp subunit, mitochondrial.	0.674
R1B4P3_EMIHU	R1F8P8_EMIHU	R1B4P3	R1F8P8	Protoheme IX farnesyltransferase.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.708
R1B4P3_EMIHU	R1FFH9_EMIHU	R1B4P3	R1FFH9	Protoheme IX farnesyltransferase.	Uncharacterized protein.	0.554
R1C4V4_EMIHU	R1CWN5_EMIHU	R1C4V4	R1CWN5	Uncharacterized protein.	Fumarate reductase.	0.618
R1C4V4_EMIHU	R1D1K9_EMIHU	R1C4V4	R1D1K9	Uncharacterized protein.	Uncharacterized protein.	0.514
R1C4V4_EMIHU	R1DV79_EMIHU	R1C4V4	R1DV79	Uncharacterized protein.	Uncharacterized protein.	0.471
R1C4V4_EMIHU	R1EUN2_EMIHU	R1C4V4	R1EUN2	Uncharacterized protein.	Succinate dehydrogenase flavo protein subunit,subunit A Fp subunit, mitochondrial.	0.749
R1C4V4_EMIHU	R1F8P8_EMIHU	R1C4V4	R1F8P8	Uncharacterized protein.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.445
R1C4V4_EMIHU	R1FFH9_EMIHU	R1C4V4	R1FFH9	Uncharacterized protein.	Uncharacterized protein.	0.787
R1CWN5_EMIHU	R1B4P3_EMIHU	R1CWN5	R1B4P3	Fumarate reductase.	Protoheme IX farnesyltransferase.	0.650
R1CWN5_EMIHU	R1C4V4_EMIHU	R1CWN5	R1C4V4	Fumarate reductase.	Uncharacterized protein.	0.618
R1CWN5_EMIHU	R1D1K9_EMIHU	R1CWN5	R1D1K9	Fumarate reductase.	Uncharacterized protein.	0.963
R1CWN5_EMIHU	R1DCR2_EMIHU	R1CWN5	R1DCR2	Fumarate reductase.	Uncharacterized protein.	0.991
R1CWN5_EMIHU	R1DV79_EMIHU	R1CWN5	R1DV79	Fumarate reductase.	Uncharacterized protein.	0.999