R1DZ39_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1DZ39_EMIHU

Uncharacterized protein. (313 aa)

Predicted Functional Partners:

R1DW49_EMIHU

0.974

R1D4Z2_EMIHU

0.968

R1DE27_EMIHU

0.951

R1DXU7_EMIHU

0.950

R1G7E4_EMIHU

0.941

R1DG09_EMIHU

0.939

R1BP93_EMIHU

0.937

R1E3C5_EMIHU

0.935

R1BQK7_EMIHU

0.934

R1BJ89_EMIHU

0.930

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1BJ89_EMIHU	R1BP93_EMIHU	R1BJ89	R1BP93	Uncharacterized protein.	Uncharacterized protein.	0.981
R1BJ89_EMIHU	R1BQK7_EMIHU	R1BJ89	R1BQK7	Uncharacterized protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.995
R1BJ89_EMIHU	R1D4Z2_EMIHU	R1BJ89	R1D4Z2	Uncharacterized protein.	Uncharacterized protein.	0.974
R1BJ89_EMIHU	R1DE27_EMIHU	R1BJ89	R1DE27	Uncharacterized protein.	RRM domain-containing protein.	0.995
R1BJ89_EMIHU	R1DG09_EMIHU	R1BJ89	R1DG09	Uncharacterized protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.995
R1BJ89_EMIHU	R1DW49_EMIHU	R1BJ89	R1DW49	Uncharacterized protein.	TRASH domain-containing protein.	0.996
R1BJ89_EMIHU	R1DXU7_EMIHU	R1BJ89	R1DXU7	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.996
R1BJ89_EMIHU	R1DZ39_EMIHU	R1BJ89	R1DZ39	Uncharacterized protein.	Uncharacterized protein.	0.930
R1BJ89_EMIHU	R1E3C5_EMIHU	R1BJ89	R1E3C5	Uncharacterized protein.	Uncharacterized protein.	0.995
R1BJ89_EMIHU	R1G7E4_EMIHU	R1BJ89	R1G7E4	Uncharacterized protein.	NOC3p domain-containing protein.	0.996
R1BP93_EMIHU	R1BJ89_EMIHU	R1BP93	R1BJ89	Uncharacterized protein.	Uncharacterized protein.	0.981
R1BP93_EMIHU	R1BQK7_EMIHU	R1BP93	R1BQK7	Uncharacterized protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.990
R1BP93_EMIHU	R1D4Z2_EMIHU	R1BP93	R1D4Z2	Uncharacterized protein.	Uncharacterized protein.	0.998
R1BP93_EMIHU	R1DE27_EMIHU	R1BP93	R1DE27	Uncharacterized protein.	RRM domain-containing protein.	0.997
R1BP93_EMIHU	R1DG09_EMIHU	R1BP93	R1DG09	Uncharacterized protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.965
R1BP93_EMIHU	R1DW49_EMIHU	R1BP93	R1DW49	Uncharacterized protein.	TRASH domain-containing protein.	0.998
R1BP93_EMIHU	R1DXU7_EMIHU	R1BP93	R1DXU7	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.997
R1BP93_EMIHU	R1DZ39_EMIHU	R1BP93	R1DZ39	Uncharacterized protein.	Uncharacterized protein.	0.937
R1BP93_EMIHU	R1E3C5_EMIHU	R1BP93	R1E3C5	Uncharacterized protein.	Uncharacterized protein.	0.993
R1BP93_EMIHU	R1G7E4_EMIHU	R1BP93	R1G7E4	Uncharacterized protein.	NOC3p domain-containing protein.	0.974