R1E037_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1E037_EMIHU

Uncharacterized protein. (316 aa)

Predicted Functional Partners:

VPS32

0.805

R1CBM4_EMIHU

0.530

Rac1-2

0.530

R1BZ90_EMIHU

0.506

VPS4

0.506

R1FX90_EMIHU

0.476

R1FX89_EMIHU

0.453

R1C0T2_EMIHU

0.452

VPS60

0.452

R1B746_EMIHU

0.422

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1B746_EMIHU	R1CBM4_EMIHU	R1B746	R1CBM4	Uncharacterized protein.	Uncharacterized protein.	0.853
R1B746_EMIHU	R1E037_EMIHU	R1B746	R1E037	Uncharacterized protein.	Uncharacterized protein.	0.422
R1B746_EMIHU	Rac1-2	R1B746	R1DYV5	Uncharacterized protein.	Rac1, RHO family GTPase.	0.853
R1BZ90_EMIHU	R1C0T2_EMIHU	R1BZ90	R1C0T2	MIT domain-containing protein.	Uncharacterized protein.	0.986
R1BZ90_EMIHU	R1E037_EMIHU	R1BZ90	R1E037	MIT domain-containing protein.	Uncharacterized protein.	0.506
R1BZ90_EMIHU	VPS32	R1BZ90	R1DXH6	MIT domain-containing protein.	Vacuolar protein sorting protein 32.	0.985
R1BZ90_EMIHU	VPS4	R1BZ90	R1E850	MIT domain-containing protein.	Vacuolar protein sorting protein 4; Belongs to the AAA ATPase family.	0.900
R1BZ90_EMIHU	VPS60	R1BZ90	R1DB38	MIT domain-containing protein.	Vacuolar protein sorting protein 60.	0.986
R1C0T2_EMIHU	R1BZ90_EMIHU	R1C0T2	R1BZ90	Uncharacterized protein.	MIT domain-containing protein.	0.986
R1C0T2_EMIHU	R1E037_EMIHU	R1C0T2	R1E037	Uncharacterized protein.	Uncharacterized protein.	0.452
R1C0T2_EMIHU	VPS32	R1C0T2	R1DXH6	Uncharacterized protein.	Vacuolar protein sorting protein 32.	0.984
R1C0T2_EMIHU	VPS4	R1C0T2	R1E850	Uncharacterized protein.	Vacuolar protein sorting protein 4; Belongs to the AAA ATPase family.	0.986
R1C0T2_EMIHU	VPS60	R1C0T2	R1DB38	Uncharacterized protein.	Vacuolar protein sorting protein 60.	0.900
R1CBM4_EMIHU	R1B746_EMIHU	R1CBM4	R1B746	Uncharacterized protein.	Uncharacterized protein.	0.853
R1CBM4_EMIHU	R1E037_EMIHU	R1CBM4	R1E037	Uncharacterized protein.	Uncharacterized protein.	0.530
R1CBM4_EMIHU	Rac1-2	R1CBM4	R1DYV5	Uncharacterized protein.	Rac1, RHO family GTPase.	0.900
R1E037_EMIHU	R1B746_EMIHU	R1E037	R1B746	Uncharacterized protein.	Uncharacterized protein.	0.422
R1E037_EMIHU	R1BZ90_EMIHU	R1E037	R1BZ90	Uncharacterized protein.	MIT domain-containing protein.	0.506
R1E037_EMIHU	R1C0T2_EMIHU	R1E037	R1C0T2	Uncharacterized protein.	Uncharacterized protein.	0.452
R1E037_EMIHU	R1CBM4_EMIHU	R1E037	R1CBM4	Uncharacterized protein.	Uncharacterized protein.	0.530