STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VTI1-3Vesicle transport through interaction with t-snares. (232 aa)    
Predicted Functional Partners:
R1BMQ8_EMIHU
Qc-snare; Belongs to the syntaxin family.
   
 0.977
R1BBP5_EMIHU
V-SNARE coiled-coil homology domain-containing protein.
   
 0.974
R1CRZ1_EMIHU
Uncharacterized protein.
    
 0.966
R1EDW2_EMIHU
Longin domain-containing protein.
    
 0.966
R1FGY6_EMIHU
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.966
VPS11
Vacuolar protein sorting 11.
    
 
 0.946
VPS18
Vacuolar protein sorting 18.
    
 
 0.945
R1ESU4_EMIHU
Qc-snare.
   
 0.894
R1F7G9_EMIHU
Qc-snare; Belongs to the syntaxin family.
   
 0.894
R1DCX5_EMIHU
Uncharacterized protein.
    
 0.889
Your Current Organism:
Emiliania huxleyi
NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi
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