PEPCK_1 protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PEPCK_1

Putative phosphoenolpyruvate carboxykinase. (574 aa)

Predicted Functional Partners:

R1DI14_EMIHU

0.946

R1DZN5_EMIHU

0.946

R1B7T2_EMIHU

0.930

R1CB91_EMIHU

0.930

R1E8Z7_EMIHU

0.930

PYC1

0.927

PYRK2

0.925

R1FQ88_EMIHU

0.925

R1G1H4_EMIHU

0.925

R1FBN4_EMIHU

0.912

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PEPCK_1	PYC1	R1EG52	R1DFR1	Putative phosphoenolpyruvate carboxykinase.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.927
PEPCK_1	PYRK2	R1EG52	R1DGX4	Putative phosphoenolpyruvate carboxykinase.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.925
PEPCK_1	R1B7T2_EMIHU	R1EG52	R1B7T2	Putative phosphoenolpyruvate carboxykinase.	Malate dehydrogenase.	0.930
PEPCK_1	R1CB91_EMIHU	R1EG52	R1CB91	Putative phosphoenolpyruvate carboxykinase.	Malate dehydrogenase.	0.930
PEPCK_1	R1DI14_EMIHU	R1EG52	R1DI14	Putative phosphoenolpyruvate carboxykinase.	Uncharacterized protein.	0.946
PEPCK_1	R1DZN5_EMIHU	R1EG52	R1DZN5	Putative phosphoenolpyruvate carboxykinase.	Phosphoenolpyruvate carboxylase.	0.946
PEPCK_1	R1E8Z7_EMIHU	R1EG52	R1E8Z7	Putative phosphoenolpyruvate carboxykinase.	Malate dehydrogenase.	0.930
PEPCK_1	R1FBN4_EMIHU	R1EG52	R1FBN4	Putative phosphoenolpyruvate carboxykinase.	Citrate synthase; Belongs to the citrate synthase family.	0.912
PEPCK_1	R1FQ88_EMIHU	R1EG52	R1FQ88	Putative phosphoenolpyruvate carboxykinase.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.925
PEPCK_1	R1G1H4_EMIHU	R1EG52	R1G1H4	Putative phosphoenolpyruvate carboxykinase.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.925
PYC1	PEPCK_1	R1DFR1	R1EG52	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Putative phosphoenolpyruvate carboxykinase.	0.927
PYC1	PYRK2	R1DFR1	R1DGX4	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.938
PYC1	R1B7T2_EMIHU	R1DFR1	R1B7T2	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Malate dehydrogenase.	0.959
PYC1	R1CB91_EMIHU	R1DFR1	R1CB91	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Malate dehydrogenase.	0.959
PYC1	R1DI14_EMIHU	R1DFR1	R1DI14	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Uncharacterized protein.	0.951
PYC1	R1DZN5_EMIHU	R1DFR1	R1DZN5	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Phosphoenolpyruvate carboxylase.	0.951
PYC1	R1E8Z7_EMIHU	R1DFR1	R1E8Z7	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Malate dehydrogenase.	0.959
PYC1	R1FBN4_EMIHU	R1DFR1	R1FBN4	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Citrate synthase; Belongs to the citrate synthase family.	0.969
PYC1	R1FQ88_EMIHU	R1DFR1	R1FQ88	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.938
PYC1	R1G1H4_EMIHU	R1DFR1	R1G1H4	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.938