R1F2J0_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1F2J0_EMIHU

Uncharacterized protein; Belongs to the peptidase M24B family. (676 aa)

Predicted Functional Partners:

R1BYU8_EMIHU

0.645

R1FSU3_EMIHU

0.645

R1DDZ2_EMIHU

0.502

R1EY19_EMIHU

0.502

Argonaute

0.497

R1C2C0_EMIHU

0.436

R1G889_EMIHU

0.426

R1E0G9_EMIHU

0.423

R1G4B6_EMIHU

0.418

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Argonaute	R1F2J0_EMIHU	R1FDF0	R1F2J0	Argonaute.	Uncharacterized protein; Belongs to the peptidase M24B family.	0.497
R1BYU8_EMIHU	R1C2C0_EMIHU	R1BYU8	R1C2C0	Uncharacterized protein.	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.616
R1BYU8_EMIHU	R1E0G9_EMIHU	R1BYU8	R1E0G9	Uncharacterized protein.	Aspartate-semialdehyde dehydrogenase.	0.737
R1BYU8_EMIHU	R1F2J0_EMIHU	R1BYU8	R1F2J0	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase M24B family.	0.645
R1BYU8_EMIHU	R1FSU3_EMIHU	R1BYU8	R1FSU3	Uncharacterized protein.	IGPS domain-containing protein.	0.995
R1C2C0_EMIHU	R1BYU8_EMIHU	R1C2C0	R1BYU8	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	Uncharacterized protein.	0.616
R1C2C0_EMIHU	R1F2J0_EMIHU	R1C2C0	R1F2J0	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	Uncharacterized protein; Belongs to the peptidase M24B family.	0.436
R1C2C0_EMIHU	R1FSU3_EMIHU	R1C2C0	R1FSU3	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	IGPS domain-containing protein.	0.616
R1DDZ2_EMIHU	R1F2J0_EMIHU	R1DDZ2	R1F2J0	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase M24B family.	0.502
R1E0G9_EMIHU	R1BYU8_EMIHU	R1E0G9	R1BYU8	Aspartate-semialdehyde dehydrogenase.	Uncharacterized protein.	0.737
R1E0G9_EMIHU	R1F2J0_EMIHU	R1E0G9	R1F2J0	Aspartate-semialdehyde dehydrogenase.	Uncharacterized protein; Belongs to the peptidase M24B family.	0.423
R1E0G9_EMIHU	R1FSU3_EMIHU	R1E0G9	R1FSU3	Aspartate-semialdehyde dehydrogenase.	IGPS domain-containing protein.	0.781
R1EY19_EMIHU	R1F2J0_EMIHU	R1EY19	R1F2J0	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase M24B family.	0.502
R1F2J0_EMIHU	Argonaute	R1F2J0	R1FDF0	Uncharacterized protein; Belongs to the peptidase M24B family.	Argonaute.	0.497
R1F2J0_EMIHU	R1BYU8_EMIHU	R1F2J0	R1BYU8	Uncharacterized protein; Belongs to the peptidase M24B family.	Uncharacterized protein.	0.645
R1F2J0_EMIHU	R1C2C0_EMIHU	R1F2J0	R1C2C0	Uncharacterized protein; Belongs to the peptidase M24B family.	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.436
R1F2J0_EMIHU	R1DDZ2_EMIHU	R1F2J0	R1DDZ2	Uncharacterized protein; Belongs to the peptidase M24B family.	Uncharacterized protein.	0.502
R1F2J0_EMIHU	R1E0G9_EMIHU	R1F2J0	R1E0G9	Uncharacterized protein; Belongs to the peptidase M24B family.	Aspartate-semialdehyde dehydrogenase.	0.423
R1F2J0_EMIHU	R1EY19_EMIHU	R1F2J0	R1EY19	Uncharacterized protein; Belongs to the peptidase M24B family.	Uncharacterized protein.	0.502
R1F2J0_EMIHU	R1FSU3_EMIHU	R1F2J0	R1FSU3	Uncharacterized protein; Belongs to the peptidase M24B family.	IGPS domain-containing protein.	0.645