R1F4L0_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1F4L0_EMIHU

FBPase; Belongs to the FBPase class 1 family. (383 aa)

Predicted Functional Partners:

R1DMT8_EMIHU

0.959

TK

0.959

HXK2

0.924

HXK1

0.924

R1BN97_EMIHU

0.911

R1ERK6_EMIHU

0.911

FBA2

0.829

R1D6Z5_EMIHU

0.729

R1DCW4_EMIHU

0.729

R1E5X1_EMIHU

0.729

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FBA2	HXK1	R1CXH4	R1E063	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	Phosphotransferase.	0.759
FBA2	HXK2	R1CXH4	R1DME7	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	Phosphotransferase.	0.759
FBA2	R1D6Z5_EMIHU	R1CXH4	R1D6Z5	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	Aldolase A.	0.918
FBA2	R1DCW4_EMIHU	R1CXH4	R1DCW4	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	Fructose-1,6-bisphosphate aldolase class II.	0.918
FBA2	R1DMT8_EMIHU	R1CXH4	R1DMT8	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	0.832
FBA2	R1E5X1_EMIHU	R1CXH4	R1E5X1	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	Fructose-1,6-bisphosphate aldolase class II.	0.918
FBA2	R1F4L0_EMIHU	R1CXH4	R1F4L0	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	FBPase; Belongs to the FBPase class 1 family.	0.829
FBA2	TK	R1CXH4	R1FB68	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	Transketolase.	0.832
HXK1	FBA2	R1E063	R1CXH4	Phosphotransferase.	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	0.759
HXK1	HXK2	R1E063	R1DME7	Phosphotransferase.	Phosphotransferase.	0.900
HXK1	R1BN97_EMIHU	R1E063	R1BN97	Phosphotransferase.	Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family.	0.957
HXK1	R1D6Z5_EMIHU	R1E063	R1D6Z5	Phosphotransferase.	Aldolase A.	0.705
HXK1	R1DCW4_EMIHU	R1E063	R1DCW4	Phosphotransferase.	Fructose-1,6-bisphosphate aldolase class II.	0.705
HXK1	R1DMT8_EMIHU	R1E063	R1DMT8	Phosphotransferase.	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	0.848
HXK1	R1E5X1_EMIHU	R1E063	R1E5X1	Phosphotransferase.	Fructose-1,6-bisphosphate aldolase class II.	0.705
HXK1	R1ERK6_EMIHU	R1E063	R1ERK6	Phosphotransferase.	Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family.	0.957
HXK1	R1F4L0_EMIHU	R1E063	R1F4L0	Phosphotransferase.	FBPase; Belongs to the FBPase class 1 family.	0.924
HXK1	TK	R1E063	R1FB68	Phosphotransferase.	Transketolase.	0.848
HXK2	FBA2	R1DME7	R1CXH4	Phosphotransferase.	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	0.759
HXK2	HXK1	R1DME7	R1E063	Phosphotransferase.	Phosphotransferase.	0.900