R1FDF2_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1FDF2_EMIHU

Aldo_ket_red domain-containing protein. (355 aa)

Predicted Functional Partners:

R1FB72_EMIHU

0.917

R1FAL5_EMIHU

0.908

R1FTE6_EMIHU

0.908

R1C6I9_EMIHU

0.906

R1CK27_EMIHU

0.906

R1DJG6_EMIHU

0.906

R1CVG3_EMIHU

0.904

R1E0D4_EMIHU

0.904

R1D2I2_EMIHU

0.900

R1EU11_EMIHU

0.900

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1C6I9_EMIHU	R1CK27_EMIHU	R1C6I9	R1CK27	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	0.900
R1C6I9_EMIHU	R1DJG6_EMIHU	R1C6I9	R1DJG6	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	0.902
R1C6I9_EMIHU	R1FAL5_EMIHU	R1C6I9	R1FAL5	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.930
R1C6I9_EMIHU	R1FB72_EMIHU	R1C6I9	R1FB72	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	Aldo_ket_red domain-containing protein.	0.906
R1C6I9_EMIHU	R1FDF2_EMIHU	R1C6I9	R1FDF2	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	Aldo_ket_red domain-containing protein.	0.906
R1C6I9_EMIHU	R1FTE6_EMIHU	R1C6I9	R1FTE6	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	Aldo_ket_red domain-containing protein.	0.906
R1CK27_EMIHU	R1C6I9_EMIHU	R1CK27	R1C6I9	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	0.900
R1CK27_EMIHU	R1DJG6_EMIHU	R1CK27	R1DJG6	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	0.901
R1CK27_EMIHU	R1FAL5_EMIHU	R1CK27	R1FAL5	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.930
R1CK27_EMIHU	R1FB72_EMIHU	R1CK27	R1FB72	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	Aldo_ket_red domain-containing protein.	0.906
R1CK27_EMIHU	R1FDF2_EMIHU	R1CK27	R1FDF2	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	Aldo_ket_red domain-containing protein.	0.906
R1CK27_EMIHU	R1FTE6_EMIHU	R1CK27	R1FTE6	Formaldehyde dehydrogenase/S-formylglutathione hydrolase.	Aldo_ket_red domain-containing protein.	0.906
R1CVG3_EMIHU	R1E0D4_EMIHU	R1CVG3	R1E0D4	Glycerol kinase; Belongs to the FGGY kinase family.	Glycerol kinase; Belongs to the FGGY kinase family.	0.900
R1CVG3_EMIHU	R1FB72_EMIHU	R1CVG3	R1FB72	Glycerol kinase; Belongs to the FGGY kinase family.	Aldo_ket_red domain-containing protein.	0.904
R1CVG3_EMIHU	R1FDF2_EMIHU	R1CVG3	R1FDF2	Glycerol kinase; Belongs to the FGGY kinase family.	Aldo_ket_red domain-containing protein.	0.904
R1CVG3_EMIHU	R1FTE6_EMIHU	R1CVG3	R1FTE6	Glycerol kinase; Belongs to the FGGY kinase family.	Aldo_ket_red domain-containing protein.	0.904
R1D2I2_EMIHU	R1EU11_EMIHU	R1D2I2	R1EU11	Uncharacterized protein.	Uncharacterized protein.	0.900
R1D2I2_EMIHU	R1FB72_EMIHU	R1D2I2	R1FB72	Uncharacterized protein.	Aldo_ket_red domain-containing protein.	0.900
R1D2I2_EMIHU	R1FDF2_EMIHU	R1D2I2	R1FDF2	Uncharacterized protein.	Aldo_ket_red domain-containing protein.	0.900
R1D2I2_EMIHU	R1FTE6_EMIHU	R1D2I2	R1FTE6	Uncharacterized protein.	Aldo_ket_red domain-containing protein.	0.900