R1FK69_EMIHU protein (Emiliania huxleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R1FK69_EMIHU

Uncharacterized protein. (546 aa)

Predicted Functional Partners:

R1F7D1_EMIHU

0.638

R1ETH7_EMIHU

0.572

R1BYK7_EMIHU

0.560

R1E7X8_EMIHU

0.560

R1FG68_EMIHU

0.560

R1DNK8_EMIHU

0.500

R1EHD1_EMIHU

0.495

R1D3S5_EMIHU

0.492

R1E0P5_EMIHU

0.492

R1DM14_EMIHU

0.491

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1BYK7_EMIHU	R1E7X8_EMIHU	R1BYK7	R1E7X8	Uncharacterized protein.	Uncharacterized protein.	0.975
R1BYK7_EMIHU	R1F7D1_EMIHU	R1BYK7	R1F7D1	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.963
R1BYK7_EMIHU	R1FG68_EMIHU	R1BYK7	R1FG68	Uncharacterized protein.	Uncharacterized protein.	0.978
R1BYK7_EMIHU	R1FK69_EMIHU	R1BYK7	R1FK69	Uncharacterized protein.	Uncharacterized protein.	0.560
R1D3S5_EMIHU	R1FK69_EMIHU	R1D3S5	R1FK69	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.492
R1DM14_EMIHU	R1DNK8_EMIHU	R1DM14	R1DNK8	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RPOL4c domain-containing protein.	0.998
R1DM14_EMIHU	R1E0P5_EMIHU	R1DM14	R1E0P5	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	DUF2236 domain-containing protein.	0.998
R1DM14_EMIHU	R1EHD1_EMIHU	R1DM14	R1EHD1	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	DNA-directed RNA polymerases II 24 kDa polypeptide.	0.999
R1DM14_EMIHU	R1ETH7_EMIHU	R1DM14	R1ETH7	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.998
R1DM14_EMIHU	R1FK69_EMIHU	R1DM14	R1FK69	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.491
R1DNK8_EMIHU	R1DM14_EMIHU	R1DNK8	R1DM14	RPOL4c domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
R1DNK8_EMIHU	R1E0P5_EMIHU	R1DNK8	R1E0P5	RPOL4c domain-containing protein.	DUF2236 domain-containing protein.	0.997
R1DNK8_EMIHU	R1EHD1_EMIHU	R1DNK8	R1EHD1	RPOL4c domain-containing protein.	DNA-directed RNA polymerases II 24 kDa polypeptide.	0.998
R1DNK8_EMIHU	R1ETH7_EMIHU	R1DNK8	R1ETH7	RPOL4c domain-containing protein.	Uncharacterized protein.	0.998
R1DNK8_EMIHU	R1FK69_EMIHU	R1DNK8	R1FK69	RPOL4c domain-containing protein.	Uncharacterized protein.	0.500
R1E0P5_EMIHU	R1DM14_EMIHU	R1E0P5	R1DM14	DUF2236 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
R1E0P5_EMIHU	R1DNK8_EMIHU	R1E0P5	R1DNK8	DUF2236 domain-containing protein.	RPOL4c domain-containing protein.	0.997
R1E0P5_EMIHU	R1EHD1_EMIHU	R1E0P5	R1EHD1	DUF2236 domain-containing protein.	DNA-directed RNA polymerases II 24 kDa polypeptide.	0.998
R1E0P5_EMIHU	R1ETH7_EMIHU	R1E0P5	R1ETH7	DUF2236 domain-containing protein.	Uncharacterized protein.	0.998
R1E0P5_EMIHU	R1FK69_EMIHU	R1E0P5	R1FK69	DUF2236 domain-containing protein.	Uncharacterized protein.	0.492